PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g54550.1
Common NameHSF04, HSF9, HSFA4B, LOC4325556, Os01g0749300, OsJ_03456, P0481E12.39
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 441aa    MW: 49387.4 Da    PI: 5.0936
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g54550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34131032101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++d++++ ++ w+  g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+++ F kg+++ l
  LOC_Os01g54550.1  13 FLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEDFIKGQRHRL 96 
                       9***************************************************************9998.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  LOC_Os01g54550.1  97 KNIHRRK 103
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.1E-619102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.98E-349102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-201336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.7E-3113102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-205163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEGGGGGGSL PPFLSKTYEM VDDPSTDAVV GWTPAGTSFV VANQPEFCRD LLPKYFKHNN  60
FSSFVRQLNT YGFRKVDPEQ WEFANEDFIK GQRHRLKNIH RRKPIFSHSS HSQGAGPLTD  120
NERKDYEEEI ERLKSDNAAL SSELQNNTLK KLNMEKRMQA LEEKLFVVED QQRSLISYVR  180
EIVKAPGFLS SFVQQQDHHR KKRRLPIPIS FHEDANTQEN QIMPCDLTNS PAQTFYRESF  240
DKMESSLNSL ENFLREASEE FGNDISYDDG VPGPSSTVVL TELHSPGESD PRVSSPPTRM  300
RTSSAGAGDS HSSRDVAEST SCAESPPIPQ MHSRVDTRAK VSEIDVNSEP AVTETGPSRD  360
QPAEEPPAVT PGANDGFWQQ FLTEQPGSSD AHQEAQSERR DGGNKVDEMK SGDRQHLWWG  420
KRNVEQITEK LGLLTSTEKT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-27310219129Heat shock factor protein 1
5d5v_B4e-27310219129Heat shock factor protein 1
5d5v_D4e-27310219129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.21520.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329950650.0
Expression AtlasQ94J16-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g54550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g54550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098560.0AK109856.1 Oryza sativa Japonica Group cDNA clone:002-148-G05, full insert sequence.
GenBankAY3444910.0AY344491.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615651.10.0heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A0E0FT510.0A0A0E0FT51_ORYNI; Uncharacterized protein
STRINGOS01T0749300-020.0(Oryza sativa)
STRINGONIVA01G35260.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.17e-88HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  3. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]
  4. Liu JG, et al.
    OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor.
    BMB Rep, 2009. 42(1): p. 16-21
    [PMID:19192388]
  5. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  6. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]