PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g09930.1 | ||||||||
Common Name | P0498B01.25 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 413aa MW: 43709 Da PI: 8.7917 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 5.9e-13 | 185 | 230 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f L+ +lP+ K +Ka+iL +A e+IksL+ LOC_Os01g09930.1 185 HMISERKRREKLNDSFVALKAVLPTG-----SKKDKASILIRAREHIKSLE 230 8899*********************6.....499***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.68E-13 | 179 | 234 | No hit | No description |
SuperFamily | SSF47459 | 6.94E-17 | 179 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.046 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 184 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 185 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-12 | 186 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00135 | 221 | 249 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MDSSSWIHGY TNANATGANS GFMCGYAASP VEFPQQQQLI SMQMGMDDES AVYDGASMVG 60 DLLMASSSAH HAGAGSFQYS SSTTSSSASF RSASVSCNPE SSAAAAPELP AATGGAFSRY 120 ARHLRPRRPP KPGACGQRMF KTAMSVLANM HVAATYRRQY YYQQAAAAAA AEAAPAPPSD 180 NQLQHMISER KRREKLNDSF VALKAVLPTG SKKDKASILI RAREHIKSLE SKLSELEEKN 240 RELEARLASR PAAKNDKGET AAAEAGDETK REDLVEIEVT TTSGGSGAAA AAATGGDQET 300 CCTLNVDLRG GGGGGMSTTD VVLRTLQCLR EQIGDGASLV AMSTSAGSGG RPPSANLTLQ 360 LKSPTYGRCS YKYEFTLFLV NRQKPTIKHI RYGSRKISMS LSMDDVTMIS PR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 193 | ERKRRE |
2 | 189 | 194 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.32770 | 1e-157 | callus| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297719712 | 1e-157 | ||||
Expression Atlas | Q5SMX2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g09930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g09930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003417 | 0.0 | AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635156.1 | 0.0 | uncharacterized protein LOC107280684 isoform X1 | ||||
TrEMBL | Q5SMX2 | 0.0 | Q5SMX2_ORYSJ; Basic helix-loop-helix protein-like | ||||
STRING | ONIVA01G07090.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Representative plant | OGRP10417 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 2e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g09930.1 |