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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os01g07450.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
MYB |
Protein Properties |
Length: 261aa MW: 27583.7 Da PI: 8.7621 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os01g07450.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 47.6 | 4e-15 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l+ ++++G +W++++ g+ R++k+c++rw +yl
LOC_Os01g07450.1 22 KGLWSPEEDERLATHIARFGVSCWSSVPDLAGLQRCGKSCRLRWMNYL 69
678*******************************************97 PP
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2 | Myb_DNA-binding | 46.6 | 8e-15 | 75 | 117 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
rgr++ E+el++ ++ +lG+ W+ Ia++++ gR+++++k++w+
LOC_Os01g07450.1 75 RGRFSHHEEELILALHDKLGNS-WSQIAARLP-GRSDNEIKNFWN 117
89******************99.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MGRAVEQQQG GCCSEKKKKL RKGLWSPEED ERLATHIARF GVSCWSSVPD LAGLQRCGKS 60 CRLRWMNYLR PDLKRGRFSH HEEELILALH DKLGNSWSQI AARLPGRSDN EIKNFWNARL 120 RKKLRQTESS SSATTAAGAA ATGHRRGEAD RSRPPPPASF NTFSHDDRTT PAPAAHIAAA 180 AAVEAPAAMT TTGGAVGGGV LVDNSGGHRD AVAEAARGHV GSGDDDGFLA VLLGEYYLDA 240 GGHGDGFSFL GGGGGGHVFS *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 118 | 124 | RLRKKLR |
2 | 119 | 125 | LRKKLRQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP002912 | 0.0 | AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10. |
GenBank | AP003339 | 0.0 | AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |