PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g03890.1 | ||||||||
Common Name | LOC4325972, Os01g0129600, OsJ_00237, P0408F06.25 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 308aa MW: 32379.6 Da PI: 7.357 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99 | 4.6e-31 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+ LOC_Os01g03890.1 4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQANATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLC 96 6******************************************************************************************** PP DUF260 89 qlkaelallk 98 q+++e +l++ LOC_Os01g03890.1 97 QSAVESVLRG 106 ***9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 4.0E-121 | 1 | 304 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.577 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQANATVF LAKFYGRAGL INLITAGPEH 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPSATAVP 120 PLPTCDIRHV GARRGDVHGA AAGPVADLHR LDISSRAKFK RPGGGAAAAH RSDHAAFELV 180 FSKPAAAMAV DVIRQAQPLN WAPGALSHES ASHDAAPPES EGHSNDTADT VDGSHVSQSE 240 PEPRATSAAT EVHDAGLDLT LGLPPPPPPV QKTEPADSDG GSQQQHDHRK EKPVELGLAI 300 STKVAAQ* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115434319 | 0.0 | ||||
Expression Atlas | Q9LG92 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g03890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g03890 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002538 | 0.0 | AP002538.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408F06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644470.1 | 0.0 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 4e-72 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | Q9LG92 | 0.0 | Q9LG92_ORYSJ; Os01g0129600 protein | ||||
STRING | OGLUM01G02100.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ONIVA01G02110.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-69 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g03890.1 |
Entrez Gene | 4325972 |