PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.2312s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 173aa MW: 19244.5 Da PI: 7.0301 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.2 | 1.2e-17 | 11 | 64 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++t++q++ Le+ F +++++++ + +L+++l+L+ rq+ vW+qN+Ra++k Kalax.2312s0002.1.p 11 SKRRLTEDQIRLLETNFSFSKKLDQDLKYHLSQQLNLPPRQIAVWYQNKRARWK 64 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 100.5 | 1.5e-32 | 12 | 102 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 krrl+++q++lLE++F+ ++kL+++ K +l+++L+l prq+avW+qn+RAR+kt+ +E+d++a+++++ +++++n++Le+eve+L+eel+ Kalax.2312s0002.1.p 12 KRRLTEDQIRLLETNFSFSKKLDQDLKYHLSQQLNLPPRQIAVWYQNKRARWKTQAMESDHKAMQSKLASVMSHNRKLEREVEKLQEELD 101 9**************************************************************************************997 PP HD-ZIP_I/II 93 e 93 + Kalax.2312s0002.1.p 102 Q 102 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-17 | 4 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.337 | 6 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-17 | 7 | 73 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.6E-16 | 8 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.66E-15 | 9 | 66 | No hit | No description |
Pfam | PF00046 | 8.2E-15 | 11 | 64 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 41 | 64 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
DTEKPDSGKG SKRRLTEDQI RLLETNFSFS KKLDQDLKYH LSQQLNLPPR QIAVWYQNKR 60 ARWKTQAMES DHKAMQSKLA SVMSHNRKLE REVEKLQEEL DQARAMVHAS STSVPAYSCA 120 VSTSGEDDGG SSFVDRSECC LDNELYACVA GVESRHQFLS VAGGFGAFGP SI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 3e-33 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.2312s0002.1.p |