PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1765s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 371aa    MW: 40521.7 Da    PI: 9.7139
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1765s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-12182227555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h + Er+RR ++N++f+ Lr llP+      +K  Ka +L  A++Y+ sLq
  Kalax.1765s0002.1.p 182 HMISERKRRVKMNESFDALRALLPPG-----TKKHKALVLNGAIDYLTSLQ 227
                          8899********************97.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.23E-13177231No hitNo description
PROSITE profilePS5088814.831177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14179242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16179245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9182227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGSPETTALL STISAATPSS YYDTSQAFRP ITMPPSSSGF GPMYNPIFYQ QAASMHDQPC  60
SFSFHNPPHY PMEAENAVMT NAILAVLSAS PSALRHSSTP YFDPLAALEG ASSSRSGSRS  120
AFTRFSTDFL PPTTTQRSPS RVSAFKRIIS YTFKSLHLKR LQEMKNEQSG GGKRPTSSQL  180
HHMISERKRR VKMNESFDAL RALLPPGTKK HKALVLNGAI DYLTSLQAQV SELSLRNLRL  240
EAQLLPRSSS SGGAESLSSS SGGAESRLVD IQINNVSEST SNDDRLVDVR VTVRGEINML  300
SAVTRVAEFF SRVNSFSLMS MDAETLLVAD SSAPSNHMFF RLRIEGSVWD EPAFREALRR  360
IVSDVAPTQP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-34bHLH family protein