PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1527s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 730aa    MW: 79945.6 Da    PI: 6.2149
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1527s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.8e-2058113156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Kalax.1527s0001.1.p  58 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 113
                          688999***********************************************998 PP
2START223.95.1e-702464661206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela +a++el+++a+a++p+W  s+    e++ ++e+l++f+++ +      ++ea+r+s+vv+m++  lve+l+d++ qW++++     
  Kalax.1527s0001.1.p 246 ELAVAAMEELIRMAQAGDPVWIPSAdnstEILCEEEYLRSFPRGIGpkplgLKSEASRESTVVIMNHISLVEILMDVN-QWSTMFSgivs 334
                          57899********************99999999**********999********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a+tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++ p    v+R++++pSg+li++++ng
  Kalax.1527s0001.1.p 335 RAMTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHPDGTWAVVDVSLDSLRPSP----VARSRRRPSGCLIQEMPNG 420
                          *****************************************************************98....7****************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwvehv++++r +h+++r+lv+s +a+gak+wvatl+rqce+
  Kalax.1527s0001.1.p 421 YSKVTWVEHVEVDDRGVHNIYRPLVNSNHAFGAKRWVATLDRQCER 466
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-2237113IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1943114IPR009057Homeodomain-like
PROSITE profilePS5007116.69855115IPR001356Homeobox domain
SMARTSM003893.1E-1956119IPR001356Homeobox domain
PfamPF000461.2E-1758113IPR001356Homeobox domain
CDDcd000868.80E-1958116No hitNo description
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PROSITE profilePS5084845.211237469IPR002913START domain
SuperFamilySSF559614.75E-38237468No hitNo description
CDDcd088755.93E-128241465No hitNo description
SMARTSM002341.3E-69246466IPR002913START domain
PfamPF018522.0E-58247466IPR002913START domain
Gene3DG3DSA:3.30.530.202.9E-6342463IPR023393START-like domain
SuperFamilySSF559619.28E-26485721No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MYQPNLFVDT SHHHLLDMGH SKTPENELGS LRDEDFESKS GTEAQSGDDQ DPNTRPKKKR  60
YHRHTQRQIQ EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKGQHERHE  120
NSQLRAENEK LRADNMRCKE VLGNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYIGK PLVTYPHLPS RSPLEIGVGS FGAQAGGMAG GDMFGVSDLI RSVSGPTEAD  240
KPVIIELAVA AMEELIRMAQ AGDPVWIPSA DNSTEILCEE EYLRSFPRGI GPKPLGLKSE  300
ASRESTVVIM NHISLVEILM DVNQWSTMFS GIVSRAMTLE VLSTGVAGNY NGALQVMTAE  360
FQVPSPLVPT RENYFVRYCK QHPDGTWAVV DVSLDSLRPS PVARSRRRPS GCLIQEMPNG  420
YSKVTWVEHV EVDDRGVHNI YRPLVNSNHA FGAKRWVATL DRQCERLASL MASNINTGDV  480
GVITRPDGRK SMLKLAERMV MSFCGGVGAS TAHTWTTLSG TNADDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWIPVPPKRV FDFLRDENSR NEWDILSNGG LVQEMAHIAN GRDPGNCVSL  600
LRVNSANSSQ SNMLILQEST TDATGSYVIY APVDVVAMNV VLNGGDPDYV ALLPSGFAIL  660
PDNGILSNSV GQHGVLDVGT GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIKCTVERI  720
KAALSCESA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266688.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A438JG680.0A0A438JG68_VITVI; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLE0CVM00.0E0CVM0_VITVI; Uncharacterized protein
STRINGVIT_10s0116g00680.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]