PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1420s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 520aa    MW: 58446.2 Da    PI: 7.5257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1420s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.7e-49321592128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ 
  Kalax.1420s0002.1.p  32 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 120
                          79***************************.89***************888889************************************* PP

                  NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + s   +++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Kalax.1420s0002.1.p 121 IRSDnlSRASIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 159
                          **98777888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5531185IPR003441NAC domain
PROSITE profilePS5100555.42631186IPR003441NAC domain
PfamPF023651.5E-2433159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSINKSVNDE QRLVEEQEDR QEAGDRQQEL VMPGFRFHPT EEELVEFYLR RKVEGKRFNV  60
ELITFLDLYR YDPWELPAMA AIGEKEWFFY VPRDRKYRNG DRPNRVTTSG YWKATGADRM  120
IRSDNLSRAS IGLKKTLVFY SGKAPKGIRT SWIMNEYRLP HHETEKHHRQ YQHQQAEISL  180
CRVYKRVGVE DHPSLPRSLP SNSSMRPSST SSSRGSGQSS NSERRNHSNN NHQYTAASVE  240
RSNAFQAAFG ASVGLLSSHQ HHHQHLFIDN NCITANDATT DGSSSNTTTT TTDNVTTTLG  300
LSKNNNDNNN AIDPPAAANA ALSNKGNDSY CFGGTAATVL PSSSSSVLGL LLAEEAHHHH  360
MHHQAKMNML MRSPNDNYAE DTSSCIWKTK TQFAGASSSS LMVTNKLYQG SNINADDELH  420
RLVLNYHQQQ PLNQQLIQFH SSHHNLDSHH HPTTSQFSNV ILPSQSHLLS LNNSLPGTSL  480
NSNTTNPAAA FSDRLWEWNP IISEGNRSEY NSNNNSPFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-54211867165NO APICAL MERISTEM PROTEIN
1ut4_B4e-54211867165NO APICAL MERISTEM PROTEIN
1ut7_A4e-54211867165NO APICAL MERISTEM PROTEIN
1ut7_B4e-54211867165NO APICAL MERISTEM PROTEIN
4dul_A4e-54211867165NAC domain-containing protein 19
4dul_B4e-54211867165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615085.11e-132NAC domain-containing protein 35 isoform X2
TrEMBLA0A0M5JHG91e-131A0A0M5JHG9_MANES; NAC transcription factors 10
STRINGcassava4.1_009166m1e-132(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-101NAC domain containing protein 35