PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1396s0003.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 525aa    MW: 59042.1 Da    PI: 4.8311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1396s0003.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-13298342655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           e+ErrRR+++N+++ +Lr l+P  +      Kl+Ka+iL  A++Y+k+L+
  Kalax.1396s0003.3.p 298 LEAERRRRKKLNERLYKLRALVPIiS------KLDKASILVDAIDYMKQLK 342
                          589*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-176154IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.27E-15290346No hitNo description
PROSITE profilePS5088816.888292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17293354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-11297341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-16298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15299354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.048406484IPR002912ACT domain
CDDcd021160.00634407464No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MLNFMDRLRP LVGSKGWDYC AVWRLSQDQR FLELMGCCCA GADDEQDKLK FLVWPQLPCQ  60
DTVFQHQRTE CCDHLCHLPS SVPLNSDIYA EAFFSSQPRW LNVNLNTFSD PQAMAKSVEQ  120
ELVGTQVLIP VLGGLVELFV AKQVAEDKSV VDFIAAQCAI PLELDALLTS SLQTRTNPAE  180
ENPQPDAERS HASPSSSYQF HQPEANNTNQ QACEMSSPKD FSQQFNCDSA AENEPPNNYA  240
MMMSGGSGSA SDMPSQSKDG VRLEAGRSDY TSDCSDQIDD EDEAKCRRRN GKCQSKNLEA  300
ERRRRKKLNE RLYKLRALVP IISKLDKASI LVDAIDYMKQ LKKQVEELRK ELEQESDNKG  360
DQTPAESVSE FVAPNNRNVA NPLGHEKVQQ MEPQVEVTPV DGSKFFIRVF CEQKPGGFVR  420
LLEALSSLGL EVTNVNVTNY RMLVSNVFQV EMTRDDIDDH HVAADDLRKS LLELTQIPVE  480
APWPDPLPDT TSDMPEYGVR ADNHFPHHHA LLNHHTSPYH LHHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286306RRRNGKCQSKNLEAERRRRKK
2300307ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841495.11e-137PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
TrEMBLA0A2I4GCB41e-136A0A2I4GCB4_JUGRE; transcription factor ABORTED MICROSPORES-like isoform X2
STRINGEMJ015031e-132(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-86bHLH family protein