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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1396s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 563aa MW: 63465.3 Da PI: 5.0624 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.5e-13 | 336 | 380 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 e+ErrRR+++N+++ +Lr l+P + Kl+Ka+iL A++Y+k+L+ Kalax.1396s0003.1.p 336 LEAERRRRKKLNERLYKLRALVPIiS------KLDKASILVDAIDYMKQLK 380 589*********************66......*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.0E-15 | 17 | 192 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 2.14E-15 | 328 | 384 | No hit | No description |
PROSITE profile | PS50888 | 16.888 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-17 | 331 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-11 | 335 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-16 | 336 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-15 | 337 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.048 | 444 | 522 | IPR002912 | ACT domain |
CDD | cd02116 | 0.00692 | 445 | 502 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MKQSQVGARR SMLNFMDRLR PLVGSKGWDY CAVWRLSQDQ RFLELMGCCC AGADDEQDKL 60 KFLVWPQLPC QDTVFQHQRT ECCDHLCHLP SSVPLNSEFD LISSNLFDSS KIRFQILTRV 120 LFFCSIYAEA FFSSQPRWLN VNLNTFSDPQ AMAKSVEQEL VGTQVLIPVL GGLVELFVAK 180 QVAEDKSVVD FIAAQCAIPL ELDALLTSSL QTRTNPAEEN PQPDAERSHA SPSSSYQFHQ 240 PEANNTNQQA CEMSSPKDFS QQFNCDSAAE NEPPNNYAMM MSGGSGSASD MPSQSKDGVR 300 LEAGRSDYTS DCSDQIDDED EAKCRRRNGK CQSKNLEAER RRRKKLNERL YKLRALVPII 360 SKLDKASILV DAIDYMKQLK KQVEELRKEL EQESDNKGDQ TPAESVSEFV APNNRNVANP 420 LGHEKVQQME PQVEVTPVDG SKFFIRVFCE QKPGGFVRLL EALSSLGLEV TNVNVTNYRM 480 LVSNVFQVEM TRDDIDDHHV AADDLRKSLL ELTQIPVEAP WPDPLPDTTS DMPEYGVRAD 540 NHFPHHHALL NHHTSPYHLH HN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 324 | 344 | RRRNGKCQSKNLEAERRRRKK |
2 | 338 | 345 | ERRRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 8e-81 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1396s0003.1.p |