PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1350s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 208aa    MW: 22716.5 Da    PI: 8.8928
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1350s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.81.3e-1648102256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+    Lee ++++++++ +++  +Akkl+L  rqV vWFqNrRa+ k
  Kalax.1350s0005.1.p  48 RKKMRLSKDLSAFLEESYKEHNTLNPKQKLAIAKKLHLRPRQVEVWFQNRRARTK 102
                          5677888999999****************************************98 PP
2HD-ZIP_I/II117.11e-3748137191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk rlsk+ +++LEes++e+++L+p++K ++a++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een rL+ke ++Lr +
  Kalax.1350s0005.1.p  48 RKKMRLSKDLSAFLEESYKEHNTLNPKQKLAIAKKLHLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRRCETLTEENGRLQKELQDLR-A 136
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Kalax.1350s0005.1.p 137 L 137
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.6944104IPR001356Homeobox domain
SMARTSM003895.0E-1446108IPR001356Homeobox domain
SuperFamilySSF466891.09E-1546105IPR009057Homeodomain-like
CDDcd000862.54E-1348105No hitNo description
Gene3DG3DSA:1.10.10.603.1E-1548102IPR009057Homeodomain-like
PfamPF000464.3E-1448102IPR001356Homeobox domain
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PfamPF021831.0E-9104138IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.8E-18104147IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MELGLSLGST TANQSSNSNA IVSYSAAEEG DNIGSNRGEE GGQELGCRKK MRLSKDLSAF  60
LEESYKEHNT LNPKQKLAIA KKLHLRPRQV EVWFQNRRAR TKLKQTEVDC EYLRRRCETL  120
TEENGRLQKE LQDLRALKSS NPLLCLQSPA TTLTMCPSCE ATNATTTTDT KSSKAVAASF  180
PAVIKSGPSS CIFPRSNADP DASSSSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969427.13e-65homeobox-leucine zipper protein HOX11
RefseqXP_022959833.11e-64homeobox-leucine zipper protein HOX11-like
SwissprotA2Z1U13e-58HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotP466654e-58HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U8AS998e-63A0A1U8AS99_NELNU; homeobox-leucine zipper protein HOX11-like
TrEMBLA0A4D6M6U29e-63A0A4D6M6U2_VIGUN; Homeobox-leucine zipper protein
STRINGXP_010265939.11e-63(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-59homeobox from Arabidopsis thaliana