PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1261s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 473aa    MW: 52787.7 Da    PI: 4.8499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1261s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.17.3e-4961341129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pG+rFhPtd el+++yL+kkv+gk++ + +vi+evd+yk+ P+dLp k  +k+++ ewyfF++r++kya+g r nrat+ gyWk+tg+
  Kalax.1261s0008.1.p   6 LAPGIRFHPTDVELIKYYLQKKVTGKHICF-DVISEVDVYKFSPSDLPdKsLLKSTDLEWYFFCPRERKYANGARMNRATEYGYWKTTGR 94 
                          579************************998.99**************96435566677******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          d++++  ++++vg+ ktL++++grap+g++tdWvmheyrle
  Kalax.1261s0008.1.p  95 DRPIKY-NHRTVGMIKTLIYHEGRAPHGNRTDWVMHEYRLE 134
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-584156IPR003441NAC domain
PROSITE profilePS5100554.1476156IPR003441NAC domain
PfamPF023651.0E-248133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAHKSLAPGI RFHPTDVELI KYYLQKKVTG KHICFDVISE VDVYKFSPSD LPDKSLLKST  60
DLEWYFFCPR ERKYANGARM NRATEYGYWK TTGRDRPIKY NHRTVGMIKT LIYHEGRAPH  120
GNRTDWVMHE YRLEDEDLSK SGVAQDAYVI CKIFLKSGPG PRSTQHLFKE EDWIDGDDDG  180
TSLDECPLNG LSFPSALNLI NPGSSTVTNP CNPGSISIDA SIEAGPSASV TFLKAADSDK  240
YNILLSELPN SPKEFPSLMN TQKDVSLSEL PQASNSNVYE MLTSTNYKQC QVGMHGNPCS  300
FPELSNDAMF STWEMHGGDN HMLPSRSHRE EVEHLPDINR GGMVQSSTLA HPDVYNELGN  360
LFDLGVDALN DDSFIELDDL SNPLGDEPHW SHLIPSDDLL SGVDPHLNRV SSFHPVDEYG  420
GSFCDNAPAE SLLLPGSSLG SIGHTDIQQK DYAVDNRNNM FFCAEKRRNQ QD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-46215711169Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.42e-79NAC domain containing protein 82