PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1251s0003.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 834aa    MW: 91172.2 Da    PI: 6.4621
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1251s0003.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.7e-19563357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Kalax.1251s0003.2.p  5 KYVRYTPEQVEALERVYAECPKPSSMKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                         5678*****************************************************97 PP
2START154.58.7e-491533602204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++ +Wv++  +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++  ++l  + ++  g
  Kalax.1251s0003.2.p 153 IAEETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCKGVAARACGLVSLEPM-KVAEILKDTPSWFRDCRTHDVLSILPTAngG 241
                          68999*****************************************************.8899999999***************99999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +l+l++++++a++++++ Rdf+ +R+i +l++g++v++++S++  +  p+   s ++vRae++pSg+li+p+++g+s +++v+h dl+  
  Kalax.1251s0003.2.p 242 TLELIYMQTYAPTTMASgRDFWKLRFISSLEDGSLVVCERSLNASTGGPTgpsSLNFVRAEVFPSGFLIRPCEGGGSIIHIVDHLDLDPC 331
                          **********************************************999999999*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          + +++lr+l++s+ + ++k++va+lq+ +
  Kalax.1251s0003.2.p 332 SAPEILRPLYESSKIIAQKITVAALQHIR 360
                          **************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.645164IPR001356Homeobox domain
SMARTSM003893.6E-16268IPR001356Homeobox domain
CDDcd000868.53E-17565No hitNo description
SuperFamilySSF466891.54E-16566IPR009057Homeodomain-like
PfamPF000462.4E-16663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-18763IPR009057Homeodomain-like
CDDcd146862.63E-65796No hitNo description
PROSITE profilePS5084823.893143344IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-17151329IPR023393START-like domain
SMARTSM002341.6E-39152362IPR002913START domain
PfamPF018521.5E-46153360IPR002913START domain
SuperFamilySSF559617.28E-31153364No hitNo description
PfamPF086704.9E-46688832IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MDSGKYVRYT PEQVEALERV YAECPKPSSM KRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKESSRL QTVNKKLTAL NRLLMEENER LQKQVSHLSY DNGFMRQKLR SVSATTNASC  120
ESVVMSGPPH SQQNPTHQHP ERDANSPAGL LAIAEETLAE FLSKATGTAV NWVQMIGMKP  180
GPDSIGIVAV SRNCKGVAAR ACGLVSLEPM KVAEILKDTP SWFRDCRTHD VLSILPTANG  240
GTLELIYMQT YAPTTMASGR DFWKLRFISS LEDGSLVVCE RSLNASTGGP TGPSSLNFVR  300
AEVFPSGFLI RPCEGGGSII HIVDHLDLDP CSAPEILRPL YESSKIIAQK ITVAALQHIR  360
QIAQENCGEI KYGGGKQPAV LRTFSQRLSR GFNDAVNGFA DDGWSLLDSV GMDDVTISIN  420
MSASKFLGSQ SNSAALFPAF GGGVLCAKAS MLLEDVPPAV LVRFLREHRS EWADYGIDAY  480
SATALRASPF AIPCSKLNTL PSNQVILPLA HTIELEEFLE VVRLEGQAFC PEDIAFARDM  540
FLLQLCSGID ENEAGPCAQI VFAPIDESFA DDALLLPSGF RVISLGNKAD EPGATRTLDL  600
ASALEVHTTG AQAAGGSGAN HFKHRAVLTM AFQFTFENHL RDSVASMARQ YVRSVVGAVQ  660
RVAMALSPAR LGSQMVVKSF PGSTEAITLA RWIAQSYKIH TGEELVRVYS QAGDSVLKLL  720
WQISDAVMCC SLTTNASPVF TFANQSGLDM LETTFGSLQD IKLEKTLNEA GHKSLLAEFP  780
KITQQGFAYL PAGNCMSSMG RPISYDQAIA WKVLDDEEVN HCLAFMFVNW SFM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281868.20.0PREDICTED: homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A438IPB20.0A0A438IPB2_VITVI; Homeobox-leucine zipper protein HOX32
TrEMBLA5AMZ10.0A5AMZ1_VITVI; Uncharacterized protein
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]