PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.1249s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 504aa MW: 56783.6 Da PI: 7.9606

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1249s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.1	2.3e-09	393	440	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E e+lvd++ +G g+W+ I r++ + Rt+ +++++w+++l Kalax.1249s0003.1.p 393 WTLPEVEKLVDGISHYGVGRWTEIQRHFFptsTYRTPVDLRDKWRNLL 440 *************************999**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-12	383	442	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.212	385	444	IPR017930	Myb domain
SuperFamily	SSF46689	6.1E-16	387	462	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-10	389	442	IPR001005	SANT/Myb domain
CDD	cd11660	5.58E-19	393	441	No hit	No description
Pfam	PF13921	9.3E-7	393	455	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MSEGKGVPHR TRVRDVEDEG TEVEHLLAEP RNDHVSVDDF FRVDNKTQDV NISGCESCTR 60 EGGENTQKVQ GKLSDIGLDN ERNALIGPST ACEDYLLDTE FVDKASDCED FPREGLSFEK 120 SSPETHSSGY SGSESSAIGP SESTSTSIGK LRNRNGYNDH KALCELHSIS QRKCGCPNQK 180 KENTEKKSPI LYTSQNRKKL QSRLGFLSCS GTSDTDFTSF SDLHRTSEEA SLISNPRKRK 240 QFLSAGPSTE RLNESEQGEP VKGSAESSMH RRSRKPPVRY IDEFSGSVSL LEEKRSTSGT 300 ARNRILNVRT SSENDNRHGE LRSFKLARQG FHGRSPNKSS DTIRNICGLS KEFSPVTRLD 360 SDEETDSDEP EKVSPARKGS KICGDRRKHQ MIWTLPEVEK LVDGISHYGV GRWTEIQRHF 420 FPTSTYRTPV DLRDKWRNLL KASNAWIQND QEEQDEESQK NGHRQLPKEI LHRISELGRL 480 YPYPVKRTPN HTPSPTPKRS SRK*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MSEGKGVPHR TRVRDVEDEG TEVEHLLAEP RNDHVSVDDF FRVDNKTQDV NISGCESCTR  60
EGGENTQKVQ GKLSDIGLDN ERNALIGPST ACEDYLLDTE FVDKASDCED FPREGLSFEK  120
SSPETHSSGY SGSESSAIGP SESTSTSIGK LRNRNGYNDH KALCELHSIS QRKCGCPNQK  180
KENTEKKSPI LYTSQNRKKL QSRLGFLSCS GTSDTDFTSF SDLHRTSEEA SLISNPRKRK  240
QFLSAGPSTE RLNESEQGEP VKGSAESSMH RRSRKPPVRY IDEFSGSVSL LEEKRSTSGT  300
ARNRILNVRT SSENDNRHGE LRSFKLARQG FHGRSPNKSS DTIRNICGLS KEFSPVTRLD  360
SDEETDSDEP EKVSPARKGS KICGDRRKHQ MIWTLPEVEK LVDGISHYGV GRWTEIQRHF  420
FPTSTYRTPV DLRDKWRNLL KASNAWIQND QEEQDEESQK NGHRQLPKEI LHRISELGRL  480
YPYPVKRTPN HTPSPTPKRS SRK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	4e-23	TRF-like 6

Link Out ? help Back to Top
Phytozome	Kalax.1249s0003.1.p