PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1245s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 511aa    MW: 55145.1 Da    PI: 6.2792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1245s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.4e-16287333455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P +      K +Ka++L  A+eY+ksLq
  Kalax.1245s0002.1.p 287 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDDAIEYLKSLQ 333
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.19E-20281349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.987283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-17286337No hitNo description
Gene3DG3DSA:4.10.280.101.2E-21287341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13287333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-17289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MANHCVPDFN MDDEYPIPSS SAPFRPSRKS SMQEDEVMEL LWQNGQIVMQ RAGSKPQQPR  60
PTFPVASGEA RDPPAPPPLF IHEDEMASWL HYPLDDPSFD RDFCTDLLYP SVSCADTAVT  120
DPIPETRPPP PPLPPPSRPP IPPARTQGFG HFSRLRPRHE AGPSKAGDGS VSVTVVESNV  180
TPAAAPPESR ESQAAGDVGG GGRGLVAGSS SVGGGLETTS LDFTVASSSG ASGAEPDFKP  240
SATEDKKRKG READDTECHS QEAVPEAADA KKQVRGSTAK RTRAAEVHNL SERRRRDRIN  300
EKMKALQELI PRCNKSDKAS MLDDAIEYLK SLQMQVQMMS MGCGMVPMMF PGMQQYMQPM  360
GMGLGVDPNR PVMPFPMATP THLAPRFPVP SYNHLPLPPF VTNAASRIQV NNPASMLNPV  420
GTQNANLVQV HPMAAQYQPY LGYQTMSMQP SQIEVMATQN ARKPNHSTGP ETTEEPQPDD  480
HGGVGSGLRV DKPAGRQLPH TASHSSVLTC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291296ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022771394.11e-129transcription factor PIF1-like isoform X2
TrEMBLA0A2R6PQ621e-130A0A2R6PQ62_ACTCH; Transcription factor like
STRINGEOX940411e-122(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.34e-59phytochrome interacting factor 3-like 5