PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.1230s0009.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 312aa MW: 34178.7 Da PI: 6.4995

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1230s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.4	4e-06	176	220	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ +eL +l+P +++ ae+ + A Y+k Lq Kalax.1230s0009.1.p 176 SIAARQRRRKIADKTQELGKLIPGgH------RMNTAEMFQSASMYVKFLQ 220 6788*****************954......9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.509	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-9	173	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-6	173	224	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-9	174	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-6	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGLSCYMSNR SAADYVLQQE QLLLELGCFQ DDFPLAHTSV DALFYPPPQK HPSFISQPPQ 60 LQTTHYGNFS SQLLPCVQQK SCHPKRQKIA PWPHPNPQSD THFNYDSMLA CGTVPFVDGC 120 WSSAADDAQL LLPLAQEFQG GDQSWLQDDF PAEAFPCGAT ADRPGGGGGG GLSAQSIAAR 180 QRRRKIADKT QELGKLIPGG HRMNTAEMFQ SASMYVKFLQ AQIAMLTLTD SLQVTLNSNL 240 GAVSSESADE GRQQIQVLVA SPVVQEKLYT QEKCLVPRRL VQSLPRDSKL QSLHPSLIKQ 300 INNLLQTPQA E*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	2e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.1230s0009.1.p