PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.1141s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 224aa MW: 24544.4 Da PI: 7.6128

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1141s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Kalax.1141s0002.1.p 53 YTCTFCRREFRSAQALGGHMNVH 75 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.39E-6	50	80	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.9E-4	51	78	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0066	53	75	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.6E-5	53	76	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.157	53	80	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MAPPDVARLP AVPHLQSQLL EPPKSADEES WEVRSFAEDT ARGMCTTWPP RSYTCTFCRR 60 EFRSAQALGG HMNVHRRDRA RLHQTRNSLM KINSPNPSAV NPTLSSTSGG SALLIPTQEL 120 LVNGGLCLLY QLRNESPNPN DPSTLLSISP YPVSSYEPSF IATYTHPSSF ASTHYSPSIS 180 KPSTSLNRNY HKNSITSEGE NSGQHNIGEL DLELRLGFGP MPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-13	48	75	2	29	superman protein
2l1o_A	2e-13	48	75	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022023300.1	3e-53	transcriptional regulator SUPERMAN-like
TrEMBL	A0A2G5D8R9	6e-52	A0A2G5D8R9_AQUCA; Uncharacterized protein
STRING	Aquca_026_00394.1	1e-52	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	4e-31	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.1141s0002.1.p