PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.1141s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 222aa MW: 24318.8 Da PI: 6.7166

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1141s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Kalax.1141s0001.1.p 46 YTCTFCRREFRSAQALGGHMNVH 68 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.35E-6	43	73	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.3E-4	44	71	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.157	46	73	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0066	46	68	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.6E-5	46	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	48	68	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
SPLLAPPKYS WTQTGNNDED EESWEVRAFA EDTANGMGTT WPPRSYTCTF CRREFRSAQA 60 LGGHMNVHRR DRARLHQTQN SLTKINSPNP GATTSSSASG GSTLLIPTQE FLVNGGLCLL 120 YQLRNESPNP NDEPSTLLSI SPYPASSYKP SFIATYPQAT YPSSVARTHH SSTISMPLTS 180 LNRIYHKNSM TSEGENSGQH NIGELDLELR LGHGPMSYLD A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-13	41	68	2	29	superman protein
2l1o_A	2e-13	41	68	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021293214.1	1e-61	LOW QUALITY PROTEIN: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1R3KVN0	3e-59	A0A1R3KVN0_COCAP; Zinc finger, C2H2-like protein
STRING	EOY24017	2e-57	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	3e-32	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.1141s0001.1.p