PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1104s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 759aa    MW: 84047.6 Da    PI: 6.0198
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1104s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21106161156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Kalax.1104s0006.1.p 106 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 161
                          7999************************************************9877 PP
2START208.52.5e-652774973206
                          HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                           ++  +el+k+a+a++p+W +s+    e++n+de++++f+ + +    +s+e++r++g+ + +l++lv +++d++ qW+++++    ka+
  Kalax.1104s0006.1.p 277 VNKSVDELIKMATAGDPLWIRSVetgrEILNYDEYVKEFPNDSAsttkRSIEVSRETGMAFVDLPKLVHSFMDVN-QWKQMFPnivsKAA 365
                          567889*********************************988889******************************.************** PP

                          EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                           ++vi++g      ga+qlm+aelq+l+p+vp R+++fvR +rql+ ++w++vdvS+d  +++  ++s+v+++++pSg+++e+ksngh+k
  Kalax.1104s0006.1.p 366 NVDVICNGeepnrnGAVQLMFAELQLLTPMVPtREVYFVRGCRQLSTDQWAVVDVSIDKVEDNI-DASLVKCRKRPSGCIFEDKSNGHCK 454
                          **************************************************************98.9************************ PP

                          EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          vtw+eh++++ + +h ++r +v +g+a+gak+w atlq+qce+
  Kalax.1104s0006.1.p 455 VTWLEHWECNRSPIHTMFRNIVYNGIAFGAKHWIATLQQQCER 497
                          *****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-2391157IPR009057Homeodomain-like
SuperFamilySSF466891.07E-2096164IPR009057Homeodomain-like
PROSITE profilePS5007118.22103163IPR001356Homeobox domain
SMARTSM003898.3E-19105167IPR001356Homeobox domain
PfamPF000461.0E-18106161IPR001356Homeobox domain
CDDcd000864.75E-17110161No hitNo description
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
PROSITE profilePS5084839.158266500IPR002913START domain
SuperFamilySSF559614.34E-31268497No hitNo description
CDDcd088753.95E-103270496No hitNo description
SMARTSM002341.4E-62275497IPR002913START domain
PfamPF018521.9E-51277497IPR002913START domain
SuperFamilySSF559613.72E-13544723No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MGVDMSNPPP SRTKDFFASP ALSLSLAGIF RGANDTGAAS EAASTDVEAW DEAGSGGGAA  60
RRAETVEMSS ENSGLVRSRS EDDYGLEGED EDEGEDNGDK SKKKKRKKYH RHTAEQIREM  120
EALFKESPHP DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKSEMDKLR  180
DENKSMREII NNSCCPNCGN ATISKDSSIT TEEQHLRIEN ARLKSEVEKL RAALEKYQPG  240
SGSPGSSSAD KERENRCSLD LYNGTFGLEK SRITEIVNKS VDELIKMATA GDPLWIRSVE  300
TGREILNYDE YVKEFPNDSA STTKRSIEVS RETGMAFVDL PKLVHSFMDV NQWKQMFPNI  360
VSKAANVDVI CNGEEPNRNG AVQLMFAELQ LLTPMVPTRE VYFVRGCRQL STDQWAVVDV  420
SIDKVEDNID ASLVKCRKRP SGCIFEDKSN GHCKVTWLEH WECNRSPIHT MFRNIVYNGI  480
AFGAKHWIAT LQQQCERLVF FMATNVPTKD SSGVTTLAGR KSILKLAERM TGSFSRVIGA  540
SSYNIWTKVA SKTGEDTRVS SRRNLNDPGE PLGLIVCAAS SVWLPVPAHT LFDFLRDETQ  600
RSQWDIMSNG GPAQSLANLA KGQDRGNSIT IQAMKANENP VWILQDSCTN SYESMVVYAP  660
VDITGMQSVM TGCDASNMAV LPSGFSILPD GIESRPLLIT SRPEERSSEG GCLLTIAFQI  720
LTNPSSKAKV TAESVESVST LISCTLKNIK ASLHCEDN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKKKRK
2101107KKKKRKK
3103107KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875609.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLM5WXG00.0M5WXG0_PRUPE; Uncharacterized protein
STRINGEMJ183590.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]