PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1092s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 310aa    MW: 33849.3 Da    PI: 5.6143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1092s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-163988255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         r +h+  E+rRR++iN++f++Lr+l+P++    ++K + a+ L +++eY+++Lq
  Kalax.1092s0006.1.p 39 RSKHSVTEQRRRSKINERFQRLRDLIPNS----DQKRDTASFLLEVIEYVQYLQ 88
                         899*************************9....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-2134109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1835109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.6093787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-143988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.06E-153988No hitNo description
SMARTSM003531.5E-114393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRSGVKNSNE EEDYGEEDQG GNQSNRDGKG SASKANATRS KHSVTEQRRR SKINERFQRL  60
RDLIPNSDQK RDTASFLLEV IEYVQYLQGE MQKYEGPYQP WSAEPAKLMP WRNSHWRTQS  120
IAPQPLGNGV GAGYAPKFND TSQSMLLGHP HEFSEPDALA DPTGKAMDQH PDLPGQAMSM  180
AMQVLSHPPQ NDGLLSHQMQ RPLSDAQSGD PSLAAGTFSQ PDGLIIESGT ISLSTAYSQG  240
LLNTLTDTLQ RAGVDLSQAN ISVQIDLGKR ANRGPVALED YGNLPSAHQP PSSSGEDLEQ  300
AQKRLKTQN*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514584.11e-102transcription factor BIM2
SwissprotQ9CAA49e-79BIM2_ARATH; Transcription factor BIM2
TrEMBLB9RLG51e-100B9RLG5_RICCO; Uncharacterized protein
STRINGXP_002514584.11e-101(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-76BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]