PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1082s0009.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 781aa    MW: 86006.2 Da    PI: 5.3387
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1082s0009.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.8e-20103158156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Kalax.1082s0009.2.p 103 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 158
                          688999***********************************************999 PP
2START206.41.2e-642985191206
                          HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                          ela +a++el+++a+ +ep+Wv s+     + +n+de+ ++f +  +     + +ea+r+++vv m++ +lve+l++ + qW  ++    
  Kalax.1082s0009.2.p 298 ELAVAAMEELLRMAQMSEPLWVPSVdgsgsSLQNEDEYNRIFHRCIGhtpdgFISEASRDTAVVMMNHSNLVEILMEAN-QWMSMFSaii 386
                          57899********************99998889999999***8877799*99***************************.********** PP

                          .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
                START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                           +a+tlevis+g      galq+m+ae+q+ +plvp R+ +fvRy++q+g+g+w++vdvS+d  ++ p    v+R++++pSg+li++ +n
  Kalax.1082s0009.2.p 387 sRAMTLEVISTGvaenfnGALQVMTAEMQLATPLVPtREIYFVRYCKQHGDGVWAVVDVSLDTLRPSP----VARCRKRPSGCLIQEIPN 472
                          ******************************************************************98....7***************** PP

                          CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          g+skvtwve+v+++ r +h+l+++lv+sgla+ga++wv tl+rqce+
  Kalax.1082s0009.2.p 473 GYSKVTWVENVEVDVRGVHNLYKPLVNSGLAFGARRWVGTLDRQCER 519
                          *********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-2285158IPR009057Homeodomain-like
SuperFamilySSF466895.43E-2087160IPR009057Homeodomain-like
PROSITE profilePS5007117.232100160IPR001356Homeobox domain
SMARTSM003898.2E-20101164IPR001356Homeobox domain
PfamPF000464.4E-18103158IPR001356Homeobox domain
CDDcd000862.83E-19103161No hitNo description
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PROSITE profilePS5084843.03289522IPR002913START domain
SuperFamilySSF559617.69E-36291521No hitNo description
CDDcd088755.86E-118293518No hitNo description
SMARTSM002345.8E-54298519IPR002913START domain
PfamPF018525.4E-54299519IPR002913START domain
Gene3DG3DSA:3.30.530.205.2E-7366517IPR023393START-like domain
SuperFamilySSF559611.49E-20537772No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MPAGIMLPAT MIGINGDNIN NVDSFVNSSL GQMNMFQQNL MMDPQQPYHH SLDMMNPNNM  60
NTHSNGLETD PLNDFESKSG SENLEGVSGD DQTDPNQQPN KKKKRYHRHT QHQIQEMEAF  120
FKECPHPDDK QRKELSRELG LEPLQVKFWF QNKRTQMKTQ HERHENTQLR NENEKLRAEN  180
MRYREALANA SCPQCGGPTA IGEMSFDEHQ LRLENARLRE EVDKISAIAA KYVGKPLNNH  240
SSPLLSPPVP SRSLELVFPF SGETTMGGGE MLGPASDHLI RSISEQQPIE ADKPVIVELA  300
VAAMEELLRM AQMSEPLWVP SVDGSGSSLQ NEDEYNRIFH RCIGHTPDGF ISEASRDTAV  360
VMMNHSNLVE ILMEANQWMS MFSAIISRAM TLEVISTGVA ENFNGALQVM TAEMQLATPL  420
VPTREIYFVR YCKQHGDGVW AVVDVSLDTL RPSPVARCRK RPSGCLIQEI PNGYSKVTWV  480
ENVEVDVRGV HNLYKPLVNS GLAFGARRWV GTLDRQCERL ASSMATYIPN GEEVFTNEEG  540
RRNMMKLADR MVMSFSAGVS ASITHTWTTL SGTGADDVRV MTRKSIDDPG RPPGIVLSAA  600
TSFWIAVPPS RVFDFLRDEN HRNQWDILCD GGVVHEMAHI ANGREAGNCI SLLRVNGANA  660
NQSNMLVLQE SCTEATASFV IYAPVDFGAM NSVLSGGDPE FVPLLPSGFA IYPDGPVGQR  720
GHGEAVGPKG AGGSLLTVAF QILVDSQPAA KLSLGSVATV NQLISSTVER IKEALTGESS  780
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109517.10.0homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLW9SD580.0W9SD58_9ROSA; Homeobox-leucine zipper protein HDG2
STRINGXP_010109517.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2