PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1040s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 276aa MW: 30042.3 Da PI: 8.4878 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.2e-18 | 123 | 177 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++ +q Lee F+++++++ ++++ LAk+lgL rqV vWFqNrRa+ k Kalax.1040s0011.1.p 123 RKKLRLSVDQSILLEETFKEHSTLNPRQKQALAKQLGLRARQVEVWFQNRRARTK 177 677889999********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 113.9 | 1e-36 | 123 | 212 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rls +q+ lLEe+F+e+++L+p++K++la++Lgl++rqv+vWFqnrRARtk+kq+E ++e++kr++++l+++ +rL+kev+eLr + Kalax.1040s0011.1.p 123 RKKLRLSVDQSILLEETFKEHSTLNPRQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEAECEFMKRNCESLMDRVRRLTKEVHELR-A 211 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Kalax.1040s0011.1.p 212 L 212 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-17 | 100 | 180 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.48E-17 | 108 | 180 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 119 | 179 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-14 | 121 | 183 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-15 | 123 | 177 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.97E-15 | 123 | 180 | No hit | No description |
PRINTS | PR00031 | 1.1E-5 | 150 | 159 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 154 | 177 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 159 | 175 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 2.2E-16 | 179 | 222 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MSEVAALGNM VMMSSSEFGS GLDLNLSLNL GAPPRLRAVE PHSFCPNPVL NLAPALSLYK 60 KVVDLTKPPT SGDQGEDGGS PNSTWSTTLT GKRAHPEEEP NLVPGRESPP RGGSDEEDGE 120 NSRKKLRLSV DQSILLEETF KEHSTLNPRQ KQALAKQLGL RARQVEVWFQ NRRARTKLKQ 180 TEAECEFMKR NCESLMDRVR RLTKEVHELR ALKVAPQYYM QMPPATTLTL CPSCERVGIP 240 APPPAAAPVN GGRVAGPVPD NPWASGAGPM NLSLF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 127 | SRKKLRL |
2 | 171 | 179 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018825158.1 | 2e-78 | PREDICTED: homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | Q05466 | 2e-74 | HAT4_ARATH; Homeobox-leucine zipper protein HAT4 | ||||
TrEMBL | A0A2I4F0I2 | 6e-77 | A0A2I4F0I2_JUGRE; homeobox-leucine zipper protein HAT4-like | ||||
STRING | XP_010053507.1 | 5e-76 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 1e-70 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1040s0011.1.p |