PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1035s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 713aa    MW: 77235 Da    PI: 7.7261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1035s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-152468147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Kalax.1035s0005.1.p 24 RERWTEEEHGRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-171874IPR009057Homeodomain-like
PROSITE profilePS5129419.2451973IPR017930Myb domain
TIGRFAMsTIGR015579.4E-172271IPR006447Myb domain, plants
SMARTSM007171.0E-102371IPR001005SANT/Myb domain
PfamPF002492.8E-122467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-82464IPR009057Homeodomain-like
CDDcd001672.78E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MDMCSSGEEM VIKPRKPYTI SKQRERWTEE EHGRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFL KLEKDASGKG VLISEVRDID IPPPRPKKKP NNPYPRKISV VAPTVPAEAK  120
DGKISIPVSS CPVKKVPESQ NGVVQEKQGG EDNLEPPCTS ISLSPLVEKV SHKDQPNQHP  180
DRASAQPTTM RKDSSKNTDL DILQPSPYSA VQSVNSEHGQ SQTWSTKAST EATQSYPSKI  240
PVNAVGSSSE PVRLGSHPLF YQFLPDQLCC AHFSPNNFTS SDASATREPK SPGEIIASLD  300
HPITSFFLNN EDGYRSDIQF SSAFSNLVVS TLQQNPAAYA AAKVAAASFW SNINTEAPAG  360
YCGGFPLKVM DTGGDSPSIT AITAATVAAA TAWWASNGLI PFCAPQQSLT HSQSCFTTNN  420
IVPSYAAART KTVTNEKSHP HPTVGLDQQA EVVNSPTFPG RNSAFKPLNI VPEKSEESQV  480
MLNNKQVPAT AVIGKNKSAA IDVEAHGSNN DLKDGKKVDR SSSGSNTTSS TELETDVLEK  540
HDSGNEESNA PDNAHSIGDS SSRRSRNIPN ANDSWKEVSE EGRVAFRALF SRQVLPQKFP  600
SSHDPVTLDT FTNIDEDSKL KLGGLASPID LNSNISESCC SDRVVKSNGR VRAESEGQEI  660
LHSNGVGKLK SHKTGFKPYK RSCIEPKDMT NSCSQGKEKR HKRTCLGGEA SA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787170.0KM078717.1 Kalanchoe fedtschenkoi isolate 1 circadian clock-associated 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A089X1Q00.0A0A089X1Q0_KALFE; Circadian clock-associated 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.33e-40MYB_related family protein