PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.1021s0011.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 460aa MW: 50572.1 Da PI: 6.9531

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1021s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7.2e-09	279	326	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Kalax.1021s0011.1.p 279 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 326 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.29E-11	273	330	No hit	No description
SuperFamily	SSF47459	3.14E-17	273	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-17	275	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	275	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-6	279	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	281	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MEKELFPWTQ NQNPATYCSP DMSYYTTTSN SNWDHSLDQF ESALSSMVSS PAASATPASA 60 SAGVHLIELI GKLGTISSHS YIPNHIHSAD NSCYTTPINS PPKLNLDQMP AFPTDPGFAE 120 RAARFSCFGS RSFNGRIGGS QFPDSEMAYN NTPLDGSAKY FPGSASHLDG VHIQDTTTTT 180 NKLPSDSKEE SSVSQKVQSN EAMGRKRKSA PRGKPKETQS SKAAMESNDS DSKRTKSDEN 240 EKGRKSGGHQ KQSKDNSKPP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD 300 LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PRMDSVHMEA LLSKEILQSR 360 TTLYPVESSN SASAAFPYAY QTQDPSCLPD ATTDSRFCNN SLNNDHLRQS HHHGLQLPSV 420 DGFCNSATQV SMWEDELHNV VQMGFGAGSM EPSQMKMEP*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MEKELFPWTQ NQNPATYCSP DMSYYTTTSN SNWDHSLDQF ESALSSMVSS PAASATPASA  60
SAGVHLIELI GKLGTISSHS YIPNHIHSAD NSCYTTPINS PPKLNLDQMP AFPTDPGFAE  120
RAARFSCFGS RSFNGRIGGS QFPDSEMAYN NTPLDGSAKY FPGSASHLDG VHIQDTTTTT  180
NKLPSDSKEE SSVSQKVQSN EAMGRKRKSA PRGKPKETQS SKAAMESNDS DSKRTKSDEN  240
EKGRKSGGHQ KQSKDNSKPP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD  300
LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PRMDSVHMEA LLSKEILQSR  360
TTLYPVESSN SASAAFPYAY QTQDPSCLPD ATTDSRFCNN SLNNDHLRQS HHHGLQLPSV  420
DGFCNSATQV SMWEDELHNV VQMGFGAGSM EPSQMKMEP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002264969.2	1e-136	PREDICTED: transcription factor bHLH77
TrEMBL	A0A438CKQ4	1e-135	A0A438CKQ4_VITVI; Transcription factor bHLH62
STRING	VIT_05s0029g00390.t01	1e-133	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-86	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.1021s0011.1.p