PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1019s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 838aa MW: 91665.3 Da PI: 6.3562 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.2e-19 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+eeLe++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Kalax.1019s0006.1.p 25 KYVRYTAEQVEELERVYAETPKPSSLRRQQLVRECpilaNIEPKQIKVWFQNRRCREKQ 83 56789****************************************************97 PP | |||||||
2 | START | 142.8 | 3.4e-45 | 164 | 369 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ gWv+++ +++g++++ +f+ s+++s a+ra+g+v +++ +e+l+d++ W +++++ e+ + + g Kalax.1019s0006.1.p 164 IAEETLAEFLSKATGTAVGWVQMPGMKPGPDSVGIFTISESSSAVAARACGLVGLEPP-KIAEILKDRLSWFRDCRSLEVFTSLPTPngG 252 68999*****************************************************.8888888888***********999976556* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l ++++ a++ l+p Rd +++Ry++ l+ g++v++++S++ ++ ++ ++vRae+lpSg+li+++++g+s +++v+h +l++ ++ Kalax.1019s0006.1.p 253 SIELLYSQMFAPTILAPaRDLWTLRYTKLLENGSLVVCERSLSGTRAASNaGGNFVRAEMLPSGYLIRSCDGGGSIIHIVDHLNLEALSV 342 *************************************************9999************************************* PP HHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 178 hwllrslvksglaegaktwvatlqrqc 204 +++lr+l+ s+ ++k++ a+l++ + Kalax.1019s0006.1.p 343 PEVLRPLYTSSKLVAQKMTIAALRYAR 369 ***********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.758 | 20 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 22 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 22 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-18 | 24 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.03E-16 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 3.1E-16 | 26 | 83 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.02E-5 | 77 | 116 | No hit | No description |
PROSITE profile | PS50848 | 23.525 | 154 | 380 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.6E-15 | 162 | 343 | IPR023393 | START-like domain |
SMART | SM00234 | 1.8E-34 | 163 | 371 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.15E-28 | 164 | 364 | No hit | No description |
Pfam | PF01852 | 2.2E-42 | 164 | 369 | IPR002913 | START domain |
Pfam | PF08670 | 3.6E-48 | 693 | 836 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MAMVVSQRRE NSGGSINKHL DASGKYVRYT AEQVEELERV YAETPKPSSL RRQQLVRECP 60 ILANIEPKQI KVWFQNRRCR EKQRNESSRL QTVNHKLTAM NKLLMEENDR LQKQVSHLVY 120 ENGYIRQQLQ SANGAAADGS CESVLTTPRQ SLRDATNPAG LLAIAEETLA EFLSKATGTA 180 VGWVQMPGMK PGPDSVGIFT ISESSSAVAA RACGLVGLEP PKIAEILKDR LSWFRDCRSL 240 EVFTSLPTPN GGSIELLYSQ MFAPTILAPA RDLWTLRYTK LLENGSLVVC ERSLSGTRAA 300 SNAGGNFVRA EMLPSGYLIR SCDGGGSIIH IVDHLNLEAL SVPEVLRPLY TSSKLVAQKM 360 TIAALRYARQ VAHETSGEEV YSLGRQPAVL RTFSQRLSRG FNDAVNGFSD AGWSVMSGDG 420 ADDVIISVNS TRNLNSPSSA NNPFPVFGGI LCAKASMLLR NVPSGVLVRF LREHRSEWAD 480 YNIDAYSAAS IKSNSFAFPG MRPASFSGSQ IIMPLGQTIE NEETLEVIRI EGHSLSPEDA 540 YMSRDIHLLQ ICSGTEEYST GACAELIFAP INEMFPDDVP LLPSGFRIIP LDTKSAADIP 600 DQLKAHRTLD LTSSLEVSQV TSQAPCGDTR SVLTIAFQFP FENNLQDSVA TMARQYVRSV 660 ITSVQRVATA ITPTGLFPNE GPKISSDTPE ALTLAQWICY SYSYHIGTDL LRAGSLAGDR 720 VLKHLWHHPD AILCCSIKAT PVLIFANQAG LDMLETTLAA LQDVSLDKIF DESGRKALCS 780 DFAKIMQQGF VYLPAGICVS TMGRDVSYSQ SVAWKVLAGD DQTVHCLAFS FVNWSFM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651164.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA | ||||
Refseq | XP_019076130.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | D7SKZ0 | 0.0 | D7SKZ0_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g02800.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1019s0006.1.p |