PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.1002s0014.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 220aa MW: 25303.2 Da PI: 7.5367

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1002s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7e-17	18	64	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W eEd++l ++v ++G ++W+ Ia++ g++R++k+c++rw++yl Kalax.1002s0014.1.p 18 AAWKLEEDQKLEKYVLKHGAKRWNQIAEKTGLNRSGKSCRLRWLNYL 64 58*******************************************97 PP
2	Myb_DNA-binding	49.7	8.6e-16	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+ +++k+lG++ W++Ia +++ gRt++++k++w+ + Kalax.1002s0014.1.p 70 RGNMSEDEEDLIQRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNFH 114 899*****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.32	12	68	IPR017930	Myb domain
SMART	SM00717	3.9E-14	16	66	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.31E-28	17	111	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-15	18	64	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-23	19	70	IPR009057	Homeodomain-like
CDD	cd00167	7.86E-11	19	64	No hit	No description
PROSITE profile	PS51294	18.553	69	119	IPR017930	Myb domain
SMART	SM00717	5.3E-15	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-14	70	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-23	71	118	IPR009057	Homeodomain-like
CDD	cd00167	1.11E-9	72	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MAAGKTRGSS YKEVTSRAAW KLEEDQKLEK YVLKHGAKRW NQIAEKTGLN RSGKSCRLRW 60 LNYLKPGIKR GNMSEDEEDL IQRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNFHLKTRVL 120 GETETYNIPS KHKTSRTSYY EKEPTTSGNN NHECHAGNPN ANQIDNECQA AGNLNANQIN 180 EADNCFDWSP HISDCSEWVN RLLDLDVEQW LQEDMDILN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-25	17	119	4	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-25	16	119	26	128	MYB TRANSFORMING PROTEIN
1mse_C	1e-25	17	119	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-25	17	119	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018825024.1	2e-61	PREDICTED: transcription factor MYB114-like
TrEMBL	A0A2I4F059	5e-60	A0A2I4F059_JUGRE; transcription factor MYB114-like
STRING	XP_008364573.1	1e-58	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27920.1	1e-47	myb domain protein 0

Link Out ? help Back to Top
Phytozome	Kalax.1002s0014.1.p