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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1002s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 526aa MW: 59113.1 Da PI: 6.5137 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.9 | 2.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Kalax.1002s0002.1.p 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 ****************55555***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.4E-8 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-11 | 6 | 44 | No hit | No description |
CDD | cd00202 | 2.46E-16 | 6 | 53 | No hit | No description |
PROSITE profile | PS50114 | 11.345 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.2E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.3E-9 | 292 | 373 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MVKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPLHA RAEELDEYED 60 YKASRVRVAN VNKPKEVKLQ KRKRNRNSDV VELGGDFHNY SHSHRRFVDD DTSNRSSSGS 120 GVSNSESFGP FSSTVGSDLT GPEQSVGWEA TVPSKKRTCF GRSKPSPIEK FTQELYTIWQ 180 EQQSYCPESP EEELLYESET PMVSVEIGHG SVLIKHPSEI AHEEDSEASS LSAEVKPYPR 240 TEAHLRPATL FVHKEDKGAA AFQAPRAVKN IRISNPPLMN REQSYRNEDA NVHDIQHLLG 300 RRDSPLCSVD LNDIVNLEEF AAQFTTQEQQ QLLKYLPKSD VERYPISLKS LFDDPLFQES 360 LLSFQRLLAE GVFDLSFPNV EPDDCRNLRR LALSNPLKPN WVALYNLLKK SKTRPAAHNV 420 TGSNVMELAK LSQKSQKSGS KLLPKDLNTV KLKHTTQAKE FADTDITSFH PKNIFAPPSE 480 NSVSPVTQPL HDADMEDDQD LLLDVPSNYA FPQAELLDPN QCLYR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385556.1 | 1e-175 | GATA transcription factor 26 isoform X1 | ||||
TrEMBL | A9PFA9 | 1e-174 | A9PFA9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s08080.1 | 1e-174 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-83 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1002s0002.1.p |