PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0984s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 292aa    MW: 32628.3 Da    PI: 4.5223
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0984s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1859112356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  Kalax.0984s0009.1.p  59 KKRRLSLHQVKALEQSFEVENKLEPERKVRLAQELGLQPRQVAIWFQNRRARWK 112
                          5668999**********************************************9 PP
2HD-ZIP_I/II127.65.1e-4158150193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qvk+LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk++yd+lk + ++L++++++L ++
  Kalax.0984s0009.1.p  58 EKKRRLSLHQVKALEQSFEVENKLEPERKVRLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNYDSLKFSFDALQRDKDSLLKQ 147
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Kalax.0984s0009.1.p 148 IRD 150
                          976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-2049116IPR009057Homeodomain-like
PROSITE profilePS5007117.52454114IPR001356Homeobox domain
SMARTSM003896.2E-1857118IPR001356Homeobox domain
CDDcd000868.72E-1859115No hitNo description
PfamPF000467.1E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-1961121IPR009057Homeodomain-like
PRINTSPR000311.1E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000311.1E-594110IPR000047Helix-turn-helix motif
PfamPF021833.9E-17114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKRPRISDSL GAALMSVYPD SDGLDQAHVY SRELQSMLEG FDSDGCVEES CGGGQMSEKK  60
RRLSLHQVKA LEQSFEVENK LEPERKVRLA QELGLQPRQV AIWFQNRRAR WKTKQLERDY  120
GVLKSNYDSL KFSFDALQRD KDSLLKQIRD LKSKLNQETP DQSNNLLIED DGDDTELIIA  180
GPPQDAILND ISSVVSFSTD FKEGFTPTTT ATSSADSGFS AILNDSKGSP NGAFSSALLQ  240
SAILTASSCS GYHPELVKME ERSLFMVEES CDFFSEEQAP TLHWYCPDQW T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682441e-39AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence.
GenBankAK1068181e-39AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence.
GenBankAP0053911e-39AP005391.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08.
GenBankAP0149641e-39AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-39CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8294461e-39CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681015.12e-91PREDICTED: homeobox-leucine zipper protein ATHB-6
TrEMBLA0A1Q3B5I23e-90A0A1Q3B5I2_CEPFO; Homeobox domain-containing protein/HALZ domain-containing protein
STRINGXP_010681015.18e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-68homeobox protein 16