PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0975s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 580aa    MW: 66548.8 Da    PI: 7.025
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0975s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix926.1e-29119204187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+l+L+e+r++++++++++++k+plW+e+s+ m  e+g +rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Kalax.0975s0008.1.p 119 RWPRQETLTLLEIRSRLDNKFKETNQKGPLWDEISRIMsDEHGHQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 204
                          8*************************************99******************************98..55667*******85 PP
2trihelix43.21e-13420486160
             trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkr 60 
                          +Wt++e+ +L+e+r +me+++++ +       ++  lWee++++m++ g ++s+ +Ck+kwe +n +
  Kalax.0975s0008.1.p 420 QWTESEITKLVEIRASMESKFEQYSgqcnnwgQEIVLWEEIANRMASLGSNKSSLMCKNKWEGINSY 486
                          7*********************8544567788*******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.061116179IPR001005SANT/Myb domain
PfamPF138375.3E-20118205No hitNo description
PROSITE profilePS500906.864119177IPR017877Myb-like domain
CDDcd122035.35E-21119184No hitNo description
PROSITE profilePS500906.574413484IPR017877Myb-like domain
SMARTSM007170.0084417486IPR001005SANT/Myb domain
CDDcd122033.28E-15419486No hitNo description
PfamPF138372.5E-8419485No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MEENHHHHQQ HHQYEVVVPD FGLTPTPCYP SHPMQPAEIS YPRNPNPAAH HFDALMMAHH  60
HQNYQQLLLE ESDHQLHSQH HEIMMNRNNN NNGSSTSGGG FAKDNTEANI CDGGSGGVRW  120
PRQETLTLLE IRSRLDNKFK ETNQKGPLWD EISRIMSDEH GHQRSGKKCR EKFENLYKYY  180
KKTKEGKAGR QDGKHYRFFR QLEALYGEKK TNTAPLLPLH EGSHFSEQNC FEHMKNSTPS  240
YTNHPNTLQL CSNANYNSGG HHNLGSLSLS CNSSEFDTAS SSEDYNGLCG TGVCEIGSNE  300
KKEMKKRRNR RNWRAKLKDF IDSQMRSLIE KQEAWLAKTM TTIEQTEKER LVREEEWKKK  360
EVERMNRERM FWAGERQWIE ARDANLMEAL RKYNLGDVLG AFNSTHVMHV DHNESKHCNQ  420
WTESEITKLV EIRASMESKF EQYSGQCNNW GQEIVLWEEI ANRMASLGSN KSSLMCKNKW  480
EGINSYLVSR NKDDFYYKKQ KGDVSRSLSG CYGTGDHGQV EGIPIFGGTV SDQAAHNVSS  540
VPSSSVSAVN NNNIVPQESF FQFLMVDHEG SENLWGNNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGcassava4.1_005544m1e-124(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-77Trihelix family protein