PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0966s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 648aa    MW: 71255.8 Da    PI: 10.1046
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0966s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-111160348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                         +WTt+E++ll  avk++G ++W+++a +++    +  +++ c++++++++
  Kalax.0966s0002.1.p 11 PWTTWEELLLTFAVKRHGCRNWDSVATEIQtrtsLPASPEACRLKFHDLR 60
                         8*****************************77776678899999998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.256164IPR017930Myb domain
SMARTSM007176.5E-5862IPR001005SANT/Myb domain
SuperFamilySSF466896.08E-7862IPR009057Homeodomain-like
CDDcd001678.83E-81159No hitNo description
Gene3DG3DSA:1.10.10.601.4E-61173IPR009057Homeodomain-like
PfamPF002494.0E-101159IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.104.1E-20243383IPR001487Bromodomain
SMARTSM002973.9E-16257367IPR001487Bromodomain
SuperFamilySSF473702.35E-19263375IPR001487Bromodomain
CDDcd043691.78E-15268362No hitNo description
PfamPF004397.4E-13270353IPR001487Bromodomain
PROSITE profilePS5001412.319276348IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MPTTEDGNQV PWTTWEELLL TFAVKRHGCR NWDSVATEIQ TRTSLPASPE ACRLKFHDLR  60
RRFASQNDDD DDDDLTVPWA EDLRRLRLDE LRAEVNRHDL SISSLQLKVK KLEQDREQSL  120
KEEEEDSALK PDLEPSNNHH LEPVDRHADR ESDPENQSVN GSNSTGPDKA KNRGSGQKEV  180
DSTRPGSDHK TEPLPPGSKQ NESPTSSSSS DESSAKGLSI DRQKNHEAEA GTKTGSDVQS  240
SATLSSKRRR EKEALEADGG LTAESQPLVN VLTLLRSHKD SSLFEQRLQN QETEKQYINV  300
VRQHMDLQTI QHNLDSGSYT SSHLSFFRDL LLMFTNSIIF LPKSSPEFKA AEELRSIVAN  360
QMDERFKSSR RDEEKPSSTP PSPGTKPVLE KSDPLLAKHK SSGGGPIVVC RKRSSKSNSA  420
RKGEPQSDVG DDMKTVALAD LNPASPKEEP SLLSSKTKNR IVTGTRSLRR SNTNLKNHVT  480
LPSAADGTGT SNSSKKETAN TTEATANEKK EELSALKKDD TSAKKKGAAD FLKRLKGNSP  540
VKSRDVKSEA KSSAAKGNNS STASGEQKKK SGHGEKQADG RKKMATRQSD LGKQSSKTER  600
ATSPAKRNVG RPSKKTLEPI APAIKRGRDT EASASTASKQ PKKRIRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.17e-80DNA-binding bromodomain-containing protein