PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0940s0015.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 383aa MW: 43668.8 Da PI: 4.3269

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0940s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.9	1.3e-13	142	226	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+ +L+ea ++ +l+r++l+ +W+e ++k+ ++ + rs ++C++k++ l+kry+k+k+ +++ + + +++ f++l+ Kalax.0940s0015.1.p 142 EWSEHETFLLLEAWGDRYLQLGRKSLRSDDWKELAEKVsEASEIDRSDVECRNKMDTLKKRYRKEKAKMEQF--GGQCKWACFKKLD 226 5***********************************667889**********************9985..6666899999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.1E-21	142	226	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MDDSEQNTRY PQMRFPVTSR HQPTYGSQSS RSLVPVRNQT HLRPVNFTRF KEDYGEDEVD 60 DDEDSYEIEE TGYGGMNGGR ADFSRGGLEE EEYGNGNRIE FGGGLERNSK KRKMKSVMDY 120 EDGGSANGGG SRELGARNGI REWSEHETFL LLEAWGDRYL QLGRKSLRSD DWKELAEKVS 180 EASEIDRSDV ECRNKMDTLK KRYRKEKAKM EQFGGQCKWA CFKKLDLLLT MSPRQQCGLA 240 CGVDSGEYVF MNPRVYLNCA NGLDEMRDSP GNSEDDGDDS DDDEEEVGLE GSASFRYLAD 300 SIKRFGEIYE KIENSKRQQM MELEKMRMDF QKEMELQKKQ ILDMAEAEIE KLRENDEDED 360 ADGGGENVDD GDTDASAENI SR*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MDDSEQNTRY PQMRFPVTSR HQPTYGSQSS RSLVPVRNQT HLRPVNFTRF KEDYGEDEVD  60
DDEDSYEIEE TGYGGMNGGR ADFSRGGLEE EEYGNGNRIE FGGGLERNSK KRKMKSVMDY  120
EDGGSANGGG SRELGARNGI REWSEHETFL LLEAWGDRYL QLGRKSLRSD DWKELAEKVS  180
EASEIDRSDV ECRNKMDTLK KRYRKEKAKM EQFGGQCKWA CFKKLDLLLT MSPRQQCGLA  240
CGVDSGEYVF MNPRVYLNCA NGLDEMRDSP GNSEDDGDDS DDDEEEVGLE GSASFRYLAD  300
SIKRFGEIYE KIENSKRQQM MELEKMRMDF QKEMELQKKQ ILDMAEAEIE KLRENDEDED  360
ADGGGENVDD GDTDASAENI SR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	VIT_11s0016g04130.t01	3e-98	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	6e-75	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0940s0015.1.p