PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0932s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 293aa MW: 32108.1 Da PI: 4.7367

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0932s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.3	9.7e-07	163	207	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ +eL +l+P +++ ae+ + A Y+k+Lq Kalax.0932s0005.1.p 163 SIAARQRRRKIADKTQELGKLIPGgH------RMNTAEMFQSASMYVKYLQ 207 6788*****************955......9***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.42	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-6	160	211	No hit	No description
SuperFamily	SSF47459	1.57E-9	161	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-9	161	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-6	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-4	163	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGLSYLSNYS TADYVLQQSL ELPQDLLELV SFQDEFTLAD TSIDPLFHPL PQKQPNFVSR 60 PQLLTSQYDT PYLHSCKRLK QIPSQQTDAH FSYDSMLASG APFFDGSGSA EALHLAQEFQ 120 ADGQPWVIDY APFSPDVFAS GTTTYDGPGG HMCGGGGGLS AQSIAARQRR RKIADKTQEL 180 GKLIPGGHRM NTAEMFQSAS MYVKYLQAQI AMLTLTNSIQ EEAGSSECFE RERDIILQVL 240 AASPVVQEKL YGQETCLVPR KLIQSLSSDS ELQSRNPSVI KQINSLLAAQ AE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0932s0005.1.p