PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0929s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 567aa MW: 64856.1 Da PI: 7.1592

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0929s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.6	1.9e-29	111	195	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+l+L+e+r+++++++++++ k+plW+e+s+ m e+g++rs k+C+ek+enl k+ykk+k+g+ +r ++ +++++f+qle Kalax.0929s0002.1.p 111 RWPRQETLTLLEIRSRLDNKFKEANHKGPLWDEISRIMsDEHGYQRSGKKCREKFENLYKYYKKTKDGKAGR--QDGKHYRFFRQLE 195 8***********************************99**************************98..55667****98 PP
2	trihelix	35.3	2.9e-11	408	472	1	59
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnk 59 +W ++ + +L++ r me ++++ + ++ lWee+++k+++ g+++s+ +Ck+kwe++n Kalax.0929s0002.1.p 408 QWAESDITKLVQTRAGMELKFEQYSgqcdwgQEFVLWEEIANKLASLGINKSASMCKNKWESINS 472 7*******************854456777*****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.023	108	171	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.12	110	169	IPR017877	Myb-like domain
CDD	cd12203	2.62E-21	111	176	No hit	No description
Pfam	PF13837	1.5E-20	111	196	No hit	No description
SMART	SM00717	13	405	473	IPR001005	SANT/Myb domain
Pfam	PF13837	1.6E-7	407	472	No hit	No description
PROSITE profile	PS50090	5.691	407	471	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MEEHHHNHRQ YEVVPDFGLA PTPCFPCTMH PADIRYVTGN PNSAAQHFDM IMMSHHHQNF 60 QQLLQESDHQ PRSQHHEMMM HNSNHNNGFS ATVAGFAEAN ILDGGSGGGG RWPRQETLTL 120 LEIRSRLDNK FKEANHKGPL WDEISRIMSD EHGYQRSGKK CREKFENLYK YYKKTKDGKA 180 GRQDGKHYRF FRQLEDLYGE NKTNYVAPLL PLRETSHFLE QNCFEHLKNT PSCCNHANRP 240 KLGSNTNYNS GGHHNFHSLS LSSNSSEFDT ISCSEDYNDL SGTGVCDNGS SDKKTKGERN 300 WKAKIKGHID SQMKRLVEKQ EAWLAEIMKT IEQTEKERLL REEEWKTKEV ERMDRERMFW 360 ANERQWIEAR DANLMEALHK FKGGEVLGAF NCYHVMSADH IDSKHNNQWA ESDITKLVQT 420 RAGMELKFEQ YSGQCDWGQE FVLWEEIANK LASLGINKSA SMCKNKWESI NSCLVSRNKG 480 DFGYKKQKGD SSRISSSGCY GTGDHGRVEG IPVFGGIGSD QATHNFSSMS SSNMNSTNNS 540 NVQQESFFRF LMVDHVGSEN IWGNKL*

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MEEHHHNHRQ YEVVPDFGLA PTPCFPCTMH PADIRYVTGN PNSAAQHFDM IMMSHHHQNF  60
QQLLQESDHQ PRSQHHEMMM HNSNHNNGFS ATVAGFAEAN ILDGGSGGGG RWPRQETLTL  120
LEIRSRLDNK FKEANHKGPL WDEISRIMSD EHGYQRSGKK CREKFENLYK YYKKTKDGKA  180
GRQDGKHYRF FRQLEDLYGE NKTNYVAPLL PLRETSHFLE QNCFEHLKNT PSCCNHANRP  240
KLGSNTNYNS GGHHNFHSLS LSSNSSEFDT ISCSEDYNDL SGTGVCDNGS SDKKTKGERN  300
WKAKIKGHID SQMKRLVEKQ EAWLAEIMKT IEQTEKERLL REEEWKTKEV ERMDRERMFW  360
ANERQWIEAR DANLMEALHK FKGGEVLGAF NCYHVMSADH IDSKHNNQWA ESDITKLVQT  420
RAGMELKFEQ YSGQCDWGQE FVLWEEIANK LASLGINKSA SMCKNKWESI NSCLVSRNKG  480
DFGYKKQKGD SSRISSSGCY GTGDHGRVEG IPVFGGIGSD QATHNFSSMS SSNMNSTNNS  540
NVQQESFFRF LMVDHVGSEN IWGNKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-82	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0929s0002.1.p