PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0923s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 518aa    MW: 57765.9 Da    PI: 4.7036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0923s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47e-15324366754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + Er RRd++N+++ +L++l+P++     kK + a+i+e A+eYIk+L
  Kalax.0923s0002.1.p 324 ATERDRRDNLNNKYTTLKSLIPSP-----KKTDRASIVEDAIEYIKEL 366
                          78**********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.383317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-12319368No hitNo description
SuperFamilySSF474595.13E-15319382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-12323366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13324391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MNLQLMQMIQ TGTCVAMYEE TACFDPNPIA DEGAIQVISN DLASIPPHGN MESSIAIPHF  60
DFDENVKFPV DEFFYKSSSK EDSMVAPTNV VASSAVGTEF QQQMAYDVEN CYYGTESDSR  120
MQEAIHEVNQ ALSYEQSNWV ASGDYEVQDM CYSSENQQQM LQDELVHNGQ GIYTSSSVLD  180
VPHPSAPDLL HLLHLPRSPS SASFLPNSTI SFVNASQSST NFQNGAGLMD AASSSAMFYD  240
PLLHLNLPPQ PPVFKDLFQS LPHGFNLPVP MNGSLFARMD EMERSRGLYH DVDGHLIDDG  300
VLEFTADMPP QMVKGRNGKL KPFATERDRR DNLNNKYTTL KSLIPSPKKT DRASIVEDAI  360
EYIKELTRTI NELKVLVEKK RRVKERMKML KTEASPDPES SSDVKHNGEL NEPLRSSWLQ  420
RKSKDTEVDV RIIDDELTVK LSQRKKANCL LTMSKILEEL QLDLQHVSGG QVGDFYSFFC  480
NTKIGETSCV YAGGIAKRLI EGVERQQAGL GTNNISF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378383KKRRVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.17e-54bHLH family protein