PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0911s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 295aa    MW: 31826.3 Da    PI: 5.7245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0911s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-12236281555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Kalax.0911s0018.1.p 236 HSIAERLRRERIAERMKGLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 281
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.15E-13229285No hitNo description
SuperFamilySSF474595.63E-16229288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.964231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-15233285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9236281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-13237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQPQPQCNGS SASPVDDMQH NLNLNSSTAA SPLMKFPLLP SSHHDLQTSS HHFDQMQQSF  60
DHAPPAPDDF LEQMLSTLNS ASAWDLKAAG ESSGSPEESD NGVSASAFQF DEAVAASRLR  120
AQQHHQHMLP LPFGVDNLVD RSRGSLLEGS SFDSYHPGVE NQMAGLFNGS FVGSLLGPGQ  180
QMNLPEQFQS SQQGGPSFEA PAAMNNQAPI SSSGGAAAAP PKQRVRARRG QATDPHSIAE  240
RLRRERIAER MKGLQELVPN ANKTDKASML DEIIDYVKFL QLQVKVSSWL TLSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850325.13e-58PREDICTED: transcription factor bHLH66
TrEMBLA0A2N9G1V18e-58A0A2N9G1V1_FAGSY; Uncharacterized protein
STRINGVIT_11s0037g00040.t013e-56(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-25LJRHL1-like 2