PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0895s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 221aa    MW: 24115.4 Da    PI: 5.0204
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0895s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.7e-41541531100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+C ++C lapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vye+ ar+rdPvyG++g i +lq+q+++l
  Kalax.0895s0005.1.p  54 PCAACKILRRRCDDKCLLAPYFPPSDPLKFTIAHRVFGASNIIKFLQELPEWQRADAVSSMVYEGTARLRDPVYGCAGAICHLQRQVSEL 143
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +aela++++e
  Kalax.0895s0005.1.p 144 QAELAKAHAE 153
                          ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.08653154IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-4054151IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MESSSGKTAP PTLSITPTTF NSSLSSSSSP PLSLSSPSTL MLPPPQSQVI VINPCAACKI  60
LRRRCDDKCL LAPYFPPSDP LKFTIAHRVF GASNIIKFLQ ELPEWQRADA VSSMVYEGTA  120
RLRDPVYGCA GAICHLQRQV SELQAELAKA HAEILTIQVQ KENRLASICT DDDQDQPTTI  180
SYGQCADVNQ NDELYGIASC MDPSLRASNL ESLWHDLREF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-425415511112LOB family transfactor Ramosa2.1
5ly0_B6e-425415511112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610820.13e-70PREDICTED: LOB domain-containing protein 1-like
RefseqXP_016509518.13e-70PREDICTED: LOB domain-containing protein 1-like
RefseqXP_019240023.14e-70PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR04e-64LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1J6JS378e-69A0A1J6JS37_NICAT; Lob domain-containing protein 1
TrEMBLA0A1S4D8508e-69A0A1S4D850_TOBAC; LOB domain-containing protein 1-like
STRINGXP_009610820.11e-69(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-66LOB domain-containing protein 1