PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0831s0011.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 188aa MW: 21269.4 Da PI: 4.3743

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0831s0011.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3e-16	2	43	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Kalax.0831s0011.3.p 2 TAQEEHLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43 99**************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.651	1	47	IPR017930	Myb domain
CDD	cd00167	1.38E-11	1	43	No hit	No description
SMART	SM00717	3.8E-10	1	45	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.34E-12	2	49	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-14	2	42	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	2	44	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MTAQEEHLVL ELHAKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKALEQ KQTTSSSMTS 60 SDSSSSSNPT LDSLSPDTEK ESFYDTGGLV AEPSLDGNKQ AQEIVDRGYS MDDIWKDLDM 120 TDESPISQLY GTFSEGSNFY CPPPVSPVWD YCSSSFWKLD DEESKMFLPS TNLPTYYDLT 180 EAPSYGC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019076057.1	2e-57	PREDICTED: transcription factor MYB59
Refseq	XP_022730937.1	2e-58	transcription factor MYB48-like
TrEMBL	A0A438G1I0	4e-56	A0A438G1I0_VITVI; Transcription factor MYB59
TrEMBL	F6GV45	5e-56	F6GV45_VITVI; Uncharacterized protein
STRING	VIT_06s0004g04140.t01	8e-57	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.1	1e-39	myb domain protein 59

Link Out ? help Back to Top
Phytozome	Kalax.0831s0011.3.p