PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0822s0018.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 141aa    MW: 16068.1 Da    PI: 6.1269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0822s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-1583129455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  Kalax.0822s0018.1.p  83 VHNMSEKRRRSRINEKMKALQDLIPNS-----NKTDKASMLDDAIEYLKQLQ 129
                          6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.8E-1976133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-1976135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.94979128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.77E-1682133No hitNo description
PfamPF000108.3E-1483129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1785134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MFDHAAAPSP AFSDSDEISA LLRQILHRSS NQCNRQFQTP TELPIDDLEE HDGPSEVGEG  60
LEALVEEAMK RRRSSKRRRA AEVHNMSEKR RRSRINEKMK ALQDLIPNSN KTDKASMLDD  120
AIEYLKQLQL RVQVFPELPD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17691RRRAAEVHNMSEKRRR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells. {ECO:0000269|PubMed:11747817}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333823e-38BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds.
GenBankBT0640563e-38BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds.
GenBankEU9671573e-38EU967157.1 Zea mays clone 299878 hypothetical protein mRNA, complete cds.
GenBankKJ7269883e-38KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047306.28e-36PREDICTED: transcription factor SPATULA isoform X2
RefseqXP_008241481.18e-36PREDICTED: transcription factor SPATULA isoform X3
RefseqXP_021273866.18e-36transcription factor SPATULA isoform X4
SwissprotQ9FHA23e-30ALC_ARATH; Transcription factor ALC
TrEMBLA0A438F5T82e-37A0A438F5T8_VITVI; Transcription factor SPATULA
STRINGVIT_07s0031g00450.t015e-35(Vitis vinifera)
STRINGEMJ057619e-36(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-26bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  4. Zumajo-Cardona C,Ambrose BA,Pabón-Mora N
    Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae).
    Evodevo, 2017. 8: p. 5
    [PMID:28331573]
  5. He H, et al.
    CELLULASE6 and MANNANASE7 Affect Cell Differentiation and Silique Dehiscence.
    Plant Physiol., 2018. 176(3): p. 2186-2201
    [PMID:29348141]