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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Kalax.0822s0018.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family |
bHLH |
Protein Properties |
Length: 141aa MW: 16068.1 Da PI: 6.1269 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Kalax.0822s0018.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 48 | 2.3e-15 | 83 | 129 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn+ E+rRR+riN+++ L++l+P++ K +Ka++L A+eY+k+Lq
Kalax.0822s0018.1.p 83 VHNMSEKRRRSRINEKMKALQDLIPNS-----NKTDKASMLDDAIEYLKQLQ 129
6*************************7.....5******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 141 aa
Download sequence Send
to blast |
MFDHAAAPSP AFSDSDEISA LLRQILHRSS NQCNRQFQTP TELPIDDLEE HDGPSEVGEG 60 LEALVEEAMK RRRSSKRRRA AEVHNMSEKR RRSRINEKMK ALQDLIPNSN KTDKASMLDD 120 AIEYLKQLQL RVQVFPELPD *
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 76 | 91 | RRRAAEVHNMSEKRRR |
Functional Description ? help
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Source |
Description |
UniProt | Required for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells. {ECO:0000269|PubMed:11747817}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT033382 | 3e-38 | BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds. |
GenBank | BT064056 | 3e-38 | BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds. |
GenBank | EU967157 | 3e-38 | EU967157.1 Zea mays clone 299878 hypothetical protein mRNA, complete cds. |
GenBank | KJ726988 | 3e-38 | KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] - Pfannebecker KC,Lange M,Rupp O,Becker A
Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] - Zumajo-Cardona C,Ambrose BA,Pabón-Mora N
Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae). Evodevo, 2017. 8: p. 5 [PMID:28331573] - He H, et al.
CELLULASE6 and MANNANASE7 Affect Cell Differentiation and Silique Dehiscence. Plant Physiol., 2018. 176(3): p. 2186-2201 [PMID:29348141]
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