PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0817s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 886aa MW: 97954.3 Da PI: 6.8487

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0817s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93	2.1e-29	576	627	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+++Fs+++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rkik++ Kalax.0817s0005.1.p 576 AEKSISLQVLQQHFSGSLKDAARSLGVCPTTLKRICRQHGIERWPSRKIKKV 627 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	8.1E-4	219	304	IPR029016	GAF domain-like
SuperFamily	SSF55781	5.05E-5	222	303	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.37	566	647	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	580	627	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.86E-21	782	871	No hit	No description
SMART	SM00666	6.5E-21	787	870	IPR000270	PB1 domain
PROSITE profile	PS51745	21.718	787	870	IPR000270	PB1 domain
Pfam	PF00564	1.5E-15	788	869	IPR000270	PB1 domain
CDD	cd06407	8.09E-34	789	869	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.1E-21	789	868	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence Send to blast
MEDVDFSPGA MFGAPFATDT DFDFMDELLE GCWLETAEGS DFLQQSPSMG SSSTHPNPQL 60 PWPSHTYLGE FPQFQMQKND QKEENCKLRF SYERNSNQAD RHGAISPHSA EQEPSNIPGC 120 SSQTASRIMN SGGEANNGRW WTAPSTPALS VMERLIRAIA CIKESKKDRD LLIQLWVPMN 180 RDGRRVLTTD NQPYVLDSKS ASLANYRNIS VTYQFSADHD SKVTEGIPSR VFLGKVPEWT 240 PDVRLYRSEE YARVDYAQRF DVRGTLVLPI FDQGSRTCLG VIEVVTTKQK IKYQHELESV 300 CSALEAFDLS SVKVQNPPLK TCSQSYQSVL PEIREVLKSA CSAHGLPLAL TWIPCLQQGK 360 AGCRHSDDNY IHCVSTVDSA CYIADANARG FLEACSEHHL LKGQGVAGKA FTTNQPCFCS 420 DITSFTKTEY PLAHHARMFG LHAAVAIRLR SIHCDVTDFV LQFFLPKNCT DGQDQMKMLN 480 SLSSIIQQAS RSLRVLTDEE LKAENASTVG DTANYADMDH GNKVAPIVQK EEPRELVTET 540 MPRQYMAGST VPDDYKMSDR SLRSVGKKGD KRRTKAEKSI SLQVLQQHFS GSLKDAARSL 600 GVCPTTLKRI CRQHGIERWP SRKIKKVGHS LEKLQRVIDS VQETSGSFKI GSVYSNFPEL 660 VSGSESGPKP LLDSKSSNEA KSPSPQPECD IVSPFTALKG KPKSQSASCS HSSSSSHSSS 720 SATPQCPATL KPVGGKETSR VRSETEVQVA SQQPAPVPKS QSLKSLGANM KQAAPVPQAP 780 VHQEADGRRV KVTYGEENIR FRMQAGWGFK DLIREILYRF SVEDMSDMQL KYLDDDSEMV 840 LLTCDADWEE CLDVCQVSEG QTIKLHLFAT AAHQIGSSFG STSFL*

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence Send to blast

MEDVDFSPGA MFGAPFATDT DFDFMDELLE GCWLETAEGS DFLQQSPSMG SSSTHPNPQL  60
PWPSHTYLGE FPQFQMQKND QKEENCKLRF SYERNSNQAD RHGAISPHSA EQEPSNIPGC  120
SSQTASRIMN SGGEANNGRW WTAPSTPALS VMERLIRAIA CIKESKKDRD LLIQLWVPMN  180
RDGRRVLTTD NQPYVLDSKS ASLANYRNIS VTYQFSADHD SKVTEGIPSR VFLGKVPEWT  240
PDVRLYRSEE YARVDYAQRF DVRGTLVLPI FDQGSRTCLG VIEVVTTKQK IKYQHELESV  300
CSALEAFDLS SVKVQNPPLK TCSQSYQSVL PEIREVLKSA CSAHGLPLAL TWIPCLQQGK  360
AGCRHSDDNY IHCVSTVDSA CYIADANARG FLEACSEHHL LKGQGVAGKA FTTNQPCFCS  420
DITSFTKTEY PLAHHARMFG LHAAVAIRLR SIHCDVTDFV LQFFLPKNCT DGQDQMKMLN  480
SLSSIIQQAS RSLRVLTDEE LKAENASTVG DTANYADMDH GNKVAPIVQK EEPRELVTET  540
MPRQYMAGST VPDDYKMSDR SLRSVGKKGD KRRTKAEKSI SLQVLQQHFS GSLKDAARSL  600
GVCPTTLKRI CRQHGIERWP SRKIKKVGHS LEKLQRVIDS VQETSGSFKI GSVYSNFPEL  660
VSGSESGPKP LLDSKSSNEA KSPSPQPECD IVSPFTALKG KPKSQSASCS HSSSSSHSSS  720
SATPQCPATL KPVGGKETSR VRSETEVQVA SQQPAPVPKS QSLKSLGANM KQAAPVPQAP  780
VHQEADGRRV KVTYGEENIR FRMQAGWGFK DLIREILYRF SVEDMSDMQL KYLDDDSEMV  840
LLTCDADWEE CLDVCQVSEG QTIKLHLFAT AAHQIGSSFG STSFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981348.1	0.0	PREDICTED: protein NLP4
Refseq	XP_017981349.1	0.0	PREDICTED: protein NLP4
TrEMBL	A0A438ETN8	0.0	A0A438ETN8_VITVI; Protein NLP2
STRING	EOY15260	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0817s0005.1.p