PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0801s0010.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 344aa MW: 37839.6 Da PI: 8.3437

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0801s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	177	224	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +K Ka +L + ++Y++sLq Kalax.0801s0010.1.p 177 SHSLAERVRRERISERMKMLQALVPGC-----EKvTGKALMLDEIINYVQSLQ 224 8***********************9.....67699*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-16	171	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.11E-10	171	228	No hit	No description
PROSITE profile	PS50888	15.383	173	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-15	173	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-6	177	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-9	179	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MAAHSYQPHH FLLSSTFFPS TPFDMSGFVN EGNISSKDSN SAIIAFANDM AASSPMRQVL 60 HEGLSDAGVI HSSKTMHSAV SSIDVEKAEV IGEQVTQNKH MRCSDHKEKK KKTRRGSSLN 120 NSTQGKAKKQ KKSEDGQNVV EEPKPNKVSK KSQMDGSEDT QKDYIHVRAR RGQATDSHSL 180 AERVRRERIS ERMKMLQALV PGCEKVTGKA LMLDEIINYV QSLQNQIEFL SMKLASFNPI 240 YSNFAMDLDA ALLRQERLSR LLAAASQPGG SAQQYSPTAV NYNNSSTTTL SGPAVGCHHH 300 SLIETSLLLQ QEAADSLSWD QMDTQTQNLM NQFGLLGNAM CSF*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MAAHSYQPHH FLLSSTFFPS TPFDMSGFVN EGNISSKDSN SAIIAFANDM AASSPMRQVL  60
HEGLSDAGVI HSSKTMHSAV SSIDVEKAEV IGEQVTQNKH MRCSDHKEKK KKTRRGSSLN  120
NSTQGKAKKQ KKSEDGQNVV EEPKPNKVSK KSQMDGSEDT QKDYIHVRAR RGQATDSHSL  180
AERVRRERIS ERMKMLQALV PGCEKVTGKA LMLDEIINYV QSLQNQIEFL SMKLASFNPI  240
YSNFAMDLDA ALLRQERLSR LLAAASQPGG SAQQYSPTAV NYNNSSTTTL SGPAVGCHHH  300
SLIETSLLLQ QEAADSLSWD QMDTQTQNLM NQFGLLGNAM CSF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021286178.1	6e-85	transcription factor bHLH137
Refseq	XP_021286179.1	6e-85	transcription factor bHLH137
STRING	EOY22603	5e-76	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	3e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0801s0010.1.p