PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0760s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 563aa    MW: 62441.6 Da    PI: 7.0668
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0760s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-14274333155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Kalax.0760s0011.1.p 274 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDNEDKAARAYDLAALKYWG 333
                          57*******************666664478446**********99*************98 PP
2AP249.79.2e-16376427155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Kalax.0760s0011.1.p 376 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 427
                          57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-11274333IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-17274342IPR016177DNA-binding domain
CDDcd000186.05E-22274343No hitNo description
Gene3DG3DSA:3.30.730.101.1E-15275342IPR001471AP2/ERF domain
SMARTSM003802.3E-27275347IPR001471AP2/ERF domain
PROSITE profilePS5103219.493275341IPR001471AP2/ERF domain
PRINTSPR003675.0E-6276287IPR001471AP2/ERF domain
CDDcd000182.25E-11376435No hitNo description
PfamPF008473.9E-10376427IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17376436IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-18377435IPR001471AP2/ERF domain
SMARTSM003807.9E-31377441IPR001471AP2/ERF domain
PROSITE profilePS5103219.111377435IPR001471AP2/ERF domain
PRINTSPR003675.0E-6417437IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAPVPDQSNW LTFSLYPNMN MMRSSDDPDH HTHRQPHHHQ QQNNHNNNNF ISYEAAASPN  60
ASSPQYFIDN FYANGYSYSK PQMDFQHHRA QQQVPDSLPW LSSSAAAPKL ENFLDSSSMV  120
RYAESQTDTQ DSGLTMYEHG SAAAAYYNQA AAQLIQTNSG SEVDDSGSLS RAAAVAGAHH  180
HQQQQQNQHQ LVEYESSANG AQQHQQSLIA FSHQQQPVQT GGLSLGVNIN NNLNTTQNLN  240
NNCGAQMVQQ EEKGTVAVVD TSKKISDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE  300
GQARKGRQVY LGGYDNEDKA ARAYDLAALK YWGPNATTNF PVANYAKELE EMKPMTKQEF  360
IASLRRKSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN KDLYLGTFAT EEEAAEAYDI  420
AAIKFRGINA VTNFEMNRYD VEAITNSTLP VGGAAKRLKS TLESEQKALV SITLNEAQPR  480
PPSHTSSSNI SFSLTQPMSA IPCGIPFDAL PSLYQQSLYH QLQNSHPALA IPEPQTSAAS  540
SGPAITFLPT TGEYYVWPHQ SY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969779.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-144AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1R3HRM30.0A0A1R3HRM3_9ROSI; Uncharacterized protein
STRINGEOX919250.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-142AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]