PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0757s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 324aa MW: 36188.9 Da PI: 6.318 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.1e-18 | 100 | 153 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Kalax.0757s0005.1.p 100 KKRRLNMEQVKTLEKSFELGNKLEPERKVQLARALGLQPRQIAIWFQNRRARWK 153 566899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.6 | 5.9e-42 | 99 | 189 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kkrrl+ eqvk+LE+sFe +kLeperKv+lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLkr++da+k++ne+L++++++L+++ Kalax.0757s0005.1.p 99 QKKRRLNMEQVKTLEKSFELGNKLEPERKVQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKRQFDAVKAHNEALQTQNQKLQSQ 188 69**************************************************************************************99 PP HD-ZIP_I/II 91 l 91 + Kalax.0757s0005.1.p 189 I 189 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.989 | 95 | 155 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.72E-19 | 97 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.5E-18 | 98 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.31E-16 | 99 | 156 | No hit | No description |
Pfam | PF00046 | 2.0E-15 | 100 | 153 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-19 | 102 | 163 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 126 | 135 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 130 | 153 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 135 | 151 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.9E-15 | 155 | 193 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGCNGMAFFP ANFMLQTSQD QEDEDDNLHQ HNQHHRHQQP PIFPSPQDFN GVAAFLGGKR 60 SMPLMEQHQS NNGCEDNANN NTNGDQDELS DDGSLAGDQK KRRLNMEQVK TLEKSFELGN 120 KLEPERKVQL ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YDALKRQFDA VKAHNEALQT 180 QNQKLQSQIL ALTSGREGGG GAAGVATESF NLNKETIDQG SCSNRSENSS DHQINMVKLG 240 PASETSPSQI PTSMPLFPTS TSTTTTNSMR PASSSNLSAT QLLFHPHNPQ HGVKEENFSN 300 MMFCGIEDHS GFWPWLDQHQ NFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 155 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614380.1 | 1e-107 | homeobox-leucine zipper protein ATHB-13-like | ||||
Refseq | XP_021614381.1 | 1e-107 | homeobox-leucine zipper protein ATHB-13-like | ||||
Refseq | XP_021614382.1 | 1e-107 | homeobox-leucine zipper protein ATHB-13-like | ||||
Refseq | XP_021614383.1 | 1e-107 | homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 3e-94 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A251KUY6 | 1e-106 | A0A251KUY6_MANES; Uncharacterized protein | ||||
STRING | POPTR_0008s14770.1 | 1e-106 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 7e-92 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0757s0005.1.p |
Publications ? help Back to Top | |||
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