PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0755s0010.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 356aa MW: 38095.7 Da PI: 9.5857

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0755s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.8	2.2e-21	43	134	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++++ ++++qC++k+e+l+kry+ + +++++ s+ +s++++f+++ Kalax.0755s0010.1.p 43 CWSHDETIALIDAYRDKWYSLRRGNLKAFHWQEVADAVagrcPLASPAKTAVQCRHKMEKLRKRYRSEIQRARSMpVSRFTSSWVHFKRM 132 8***********************************76553444589*********************97799********* PP trihelix 86 ea 87 +a Kalax.0755s0010.1.p 133 DA 134 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.8E-22	42	135	No hit	No description
SMART	SM00595	1.8E-13	51	140	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MAGSPPSPHP DDSNAHHSPP PSQPPQQAQP TSQPSSRRLP PPCWSHDETI ALIDAYRDKW 60 YSLRRGNLKA FHWQEVADAV AGRCPLASPA KTAVQCRHKM EKLRKRYRSE IQRARSMPVS 120 RFTSSWVHFK RMDAMEKGPT LAKPVDDSAS DEDNDDEDDA ELEGYEFPDV GRYGRNGGSG 180 GKAGFGLVGN GVGGSGSGGG YSGGGGGGFR IKIPNGVSIA KPGSGFRSKG HGKYDDLPTA 240 SPNLGPLAAR DGYWKGSGGC RAGGGAGAGG SGSGKREREG DAVSEMVAAI NMLADGFVKT 300 EQKKMEMARE IEVMRMDMET KRLKMILESQ ERVMEAFTKA TSDKKKPKRM AASPE*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MAGSPPSPHP DDSNAHHSPP PSQPPQQAQP TSQPSSRRLP PPCWSHDETI ALIDAYRDKW  60
YSLRRGNLKA FHWQEVADAV AGRCPLASPA KTAVQCRHKM EKLRKRYRSE IQRARSMPVS  120
RFTSSWVHFK RMDAMEKGPT LAKPVDDSAS DEDNDDEDDA ELEGYEFPDV GRYGRNGGSG  180
GKAGFGLVGN GVGGSGSGGG YSGGGGGGFR IKIPNGVSIA KPGSGFRSKG HGKYDDLPTA  240
SPNLGPLAAR DGYWKGSGGC RAGGGAGAGG SGSGKREREG DAVSEMVAAI NMLADGFVKT  300
EQKKMEMARE IEVMRMDMET KRLKMILESQ ERVMEAFTKA TSDKKKPKRM AASPE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475374.1	1e-121	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A0D2S0Z5	1e-119	A0A0D2S0Z5_GOSRA; Uncharacterized protein
STRING	Gorai.004G167100.1	1e-120	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-54	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0755s0010.1.p