PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0750s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 25105.5 Da PI: 6.532 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 78 | 129 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q +Le +Fe++ ++ +e++e +A++lgL+ rqV vWFqNrRa++k Kalax.0750s0016.1.p 78 RKLTDYQAVQLELCFESEAKLETERKETIAAELGLEPRQVAVWFQNRRARWK 129 5899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 105.9 | 3e-34 | 77 | 166 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kr+l++ q+ +LE +Fe+e kLe+erK+++a eLgl+prqvavWFqnrRAR+k k+lE +++ L+++++ + +++++Le++v+eL +l Kalax.0750s0016.1.p 77 KRKLTDYQAVQLELCFESEAKLETERKETIAAELGLEPRQVAVWFQNRRARWKCKKLEDEFANLRTSHQCVLAQKAQLEAQVSELSGRLV 166 9************************************************************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.2E-13 | 74 | 135 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.84E-16 | 77 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.965 | 77 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.49E-14 | 77 | 129 | No hit | No description |
Pfam | PF00046 | 5.5E-17 | 78 | 129 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 81 | 129 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.5E-5 | 102 | 111 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.5E-5 | 111 | 127 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MMTSNMVTMP VNGGHNFPVQ GGDDQLMMFL SSQQQKCLFD PVTLGPKTED QPGKAVKKQR 60 KRKPKNRGGE NGAGYGKRKL TDYQAVQLEL CFESEAKLET ERKETIAAEL GLEPRQVAVW 120 FQNRRARWKC KKLEDEFANL RTSHQCVLAQ KAQLEAQVSE LSGRLVEAES ELQRLSARCE 180 SGISVENSST PGSSLSMEGV QLLENGYAQV MDDYWMSNLY EMM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 66 | RKRKPKNR |
2 | 60 | 78 | KRKPKNRGGENGAGYGKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021602292.1 | 8e-41 | homeobox-leucine zipper protein ATHB-40-like | ||||
TrEMBL | A0A199UBK8 | 2e-39 | A0A199UBK8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026937m | 3e-40 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 2e-38 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0750s0016.1.p |