PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0743s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 360aa MW: 38756 Da PI: 6.3524

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0743s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.7	6.6e-16	178	224	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq Kalax.0743s0005.1.p 178 VHNLSEKRRRSRINEKLKSLQKLIPNS-----NKSDKASMLDEAIEYLKQLQ 224 6***********************7.....59***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-19	171	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-19	171	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.6	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.61E-17	177	228	No hit	No description
Pfam	PF00010	1.9E-13	178	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-17	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MADLYGTNAY STTPSSSSAS LPLESEDLST FLQHLLHPSP SSSSCMPFRG KHASVLPSSF 60 VSAPEGMTAA GLLNSMDEDR DGVGRMGIGP SSFVAPSAGI NFADPGGYLA TGADDVSRKG 120 FSFVDGRTIG DQVDREFRLE KDSNEFRFEN ENGAGASITH TNPVKSRSSS KRSRAAEVHN 180 LSEKRRRSRI NEKLKSLQKL IPNSNKSDKA SMLDEAIEYL KQLQLQVQML SMRKGVSLHP 240 LCMPGVAQSL HLPPGETSYG GGDDMLSRGN DMPNPISPTG TFTLNREASM PPSFDISNHG 300 NSSNQSDPRP LNNNPNSEIA FGFNQSLEAH YKAFNFCSQS KDTSAEEILH LDSGNTMKG*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MADLYGTNAY STTPSSSSAS LPLESEDLST FLQHLLHPSP SSSSCMPFRG KHASVLPSSF  60
VSAPEGMTAA GLLNSMDEDR DGVGRMGIGP SSFVAPSAGI NFADPGGYLA TGADDVSRKG  120
FSFVDGRTIG DQVDREFRLE KDSNEFRFEN ENGAGASITH TNPVKSRSSS KRSRAAEVHN  180
LSEKRRRSRI NEKLKSLQKL IPNSNKSDKA SMLDEAIEYL KQLQLQVQML SMRKGVSLHP  240
LCMPGVAQSL HLPPGETSYG GGDDMLSRGN DMPNPISPTG TFTLNREASM PPSFDISNHG  300
NSSNQSDPRP LNNNPNSEIA FGFNQSLEAH YKAFNFCSQS KDTSAEEILH LDSGNTMKG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	2e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0743s0005.1.p