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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0733s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 516aa MW: 54995.9 Da PI: 5.3849 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 6.3e-09 | 338 | 386 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Kalax.0733s0017.1.p 338 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 386 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.81E-11 | 333 | 390 | No hit | No description |
SuperFamily | SSF47459 | 7.98E-17 | 333 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 335 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 336 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-6 | 338 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 341 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MTDDNKFETE KRPEDSMNYH PSHMSSDWAY DIIPGSSMGL DSSAACEGGN VIGSSSCPSD 60 PMMISGPDSW NRSVVGSNVG FCGIDVGNSA GSFSMLEQLR GSGELMRPMF DGEWNPKGGL 120 FLPNGPGLPL RSLSQFPSDS GFIERAARFS CFGSGSFSDM VNPFAAPESV SPLARGPSIV 180 DGSRPLAFEN EVIMAGASTS GGRNGSLSRN RSVARSLDES RQGLGASSNE SDEANFGGGD 240 GREEPSMLEA AGGETCPARG HGANKRKRAG QSARANKSNG ASPKSVDGAK PGGERSEQKP 300 SPGSNTKAPE KPEQKSQGTD PPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD 360 LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLSTVN PRLDFDIESL LTKDMFQPRA 420 GSSSTSGFPS DTCMGYQHQI TSLSAQFQAG VPISGSSMEA HLAVMGFKEP NSQLANMWDD 480 ELHNVVHMGF GNSSEPSKSQ EINDSLQSGP MKPEP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010654187.1 | 1e-151 | PREDICTED: transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_010654195.1 | 1e-151 | PREDICTED: transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_010654202.1 | 1e-151 | PREDICTED: transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_010654208.1 | 1e-151 | PREDICTED: transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_019076890.1 | 1e-151 | PREDICTED: transcription factor bHLH49 isoform X1 | ||||
TrEMBL | A0A2P5E2N7 | 1e-151 | A0A2P5E2N7_PARAD; Basic helix-loop-helix transcription factor | ||||
STRING | POPTR_0010s14600.1 | 1e-149 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 2e-92 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0733s0017.1.p |