PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0730s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 486aa    MW: 53740.6 Da    PI: 4.5598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0730s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.2e-153279148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W   Ed +l+d+vk++G g+W+++ +  g+ R++k+c++rw ++l
  Kalax.0730s0001.1.p 32 KGSWISSEDAILADYVKKHGEGNWNAVQKFSGLSRCGKSCRLRWVNHL 79
                         78999****************************************996 PP
2Myb_DNA-binding48.71.8e-1585128146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g+++ eE+ ++++++++lG++ W++ a++++ gRt++++k++w++
  Kalax.0730s0001.1.p  85 KGAFSLEEERKIIELHAKLGNK-WSRLAAELP-GRTDNDIKNFWNT 128
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.3612779IPR017930Myb domain
SuperFamilySSF466892.23E-2630126IPR009057Homeodomain-like
SMARTSM007172.0E-113181IPR001005SANT/Myb domain
PfamPF002495.6E-133279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-203386IPR009057Homeodomain-like
CDDcd001674.08E-93479No hitNo description
PROSITE profilePS5129424.09480134IPR017930Myb domain
SMARTSM007177.2E-1584132IPR001005SANT/Myb domain
PfamPF002492.1E-1485128IPR001005SANT/Myb domain
CDDcd001672.79E-1187128No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2387132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MERHMSDEIS DSPSGEEVDG EGKLSGRGPL NKGSWISSED AILADYVKKH GEGNWNAVQK  60
FSGLSRCGKS CRLRWVNHLK SNLKKGAFSL EEERKIIELH AKLGNKWSRL AAELPGRTDN  120
DIKNFWNTRI KKLQRAGLPI YPPDVCLKKA NDSQKSPDSG TLSDHLTSGH FFMEASNFVI  180
PEFKIERPLN LRLYSYPSPF LDSPTSNMLP QGLDHPQERP PESNNTPRGL CNTDAWEKQH  240
PLYQLPPPPE SHSCADPSLC FPVVSHALIN GNPSSFEPDF GSVKLELPSL QSLESDFILG  300
DDSATPILPF EDSDPLAQFT QAGTNPLQYT PDTDGLLESV ICPPKSAKSS KDEFGETYPE  360
HKTTGDVDDL YFDFSGNELE AFAGRITPMD ASIPSIFSDF TTSINELQST EVGTEPGTLY  420
ADFEQYLTCP NMNGNSDPYQ LDPSRPDTWF NANLLSPNSE QGRNYHTLQQ ALSAIAGNDT  480
QQLQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25301325106B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.17e-63myb domain protein 65