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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Kalax.0693s0015.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
bHLH |
| Protein Properties |
Length: 424aa MW: 46243 Da PI: 5.6358 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0693s0015.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 34.8 | 3e-11 | 197 | 248 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i +e++++L+
Kalax.0693s0015.1.p 197 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGSIEFVRELE 248
79****************************...9****************99985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 424 aa
Download sequence Send
to blast |
MSMDKVESYS AAASSSSMAP GAQAYAPVPE YSDQQQHMQQ LMKARAPPFT VPQHRSHGGP 60
SSSLMVDYTL NNNFNNQQQE QNALLAGFSD VMQFADFGPK LGLNQSKMSS DDETGIDPVF 120
FLKFPVLNDK LLEEEGGEQL LGVGEGEPAG ADQVGFEKSV VAAATAAPGD QAAALASGKN 180
KRKRGRAVKT SEEVESQRMT HIAVERNRRK QMNEHLRVLR SLMPGSYVQR GDQASIIGGS 240
IEFVRELEQL LQCLESQKRR RLYGDNPASN SNPATRQIGG GVMGDATTVT GLVQQQQQHP 300
MMFPPPNCLS NVPGDHQTGF DAAVDQEEEI AENKSCLADV EVKVLGFDAM IKILSRRRPG 360
QLIRTIAALE DLKLVIMHTN ITTIEQTVLY SFNVKVSSET RYSAEDIASS VQQIFSFIHA 420
HTS*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 197 | 208 | RMTHIAVERNRR |
| 2 | 257 | 261 | KRRRL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator (PubMed:17088607, PubMed:17183265, PubMed:17183267). Together with MYB88 and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata (PubMed:17088607, PubMed:17183265, PubMed:17183267). Prevents histone H3K27me3 marks and derepresses stem cell gene expression (PubMed:24654956). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Inhibited by low relative humidity (LRH) via epigenetic CG methylation, thus leading to a reduced stomatal index. {ECO:0000269|PubMed:22442411}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Matos JL, et al.
Irreversible fate commitment in the Arabidopsis stomatal lineage requires a FAMA and RETINOBLASTOMA-RELATED module.
Elife, 2015.
[PMID:25303364] - Chen L, et al.
NRPB3, the third largest subunit of RNA polymerase II, is essential for stomatal patterning and differentiation in Arabidopsis.
Development, 2016. 143(9): p. 1600-11
[PMID:26989174] - Lee JH,Jung JH,Park CM
Light Inhibits COP1-Mediated Degradation of ICE Transcription Factors to Induce Stomatal Development in Arabidopsis.
Plant Cell, 2017. 29(11): p. 2817-2830
[PMID:29070509] - Han X, et al.
Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons.
Plant Physiol., 2018. 176(4): p. 2871-2885
[PMID:29496884] - Li X,Yang R,Chen H
The Arabidopsis thaliana Mediator subunit MED8 regulates plant immunity to Botrytis Cinerea through interacting with the basic helix-loop-helix (bHLH) transcription factor FAMA.
PLoS ONE, 2018. 13(3): p. e0193458
[PMID:29513733]
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