PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0688s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 443aa MW: 49498.6 Da PI: 7.1532

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0688s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46	1.2e-14	46	90	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT +E+++++da k++G W+ I + +g ++t+ q++s+ qk+ Kalax.0688s0005.1.p 46 REKWTDQEHQKFLDALKLYGRA-WRQIEEFIG-TKTAVQIRSHAQKF 90 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.21E-15	40	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.496	41	95	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.4E-16	44	93	IPR006447	Myb domain, plants
SMART	SM00717	1.4E-11	45	93	IPR001005	SANT/Myb domain
Pfam	PF00249	6.0E-12	46	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-8	46	86	IPR009057	Homeodomain-like
CDD	cd00167	1.34E-8	48	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MDLLQNQPPP KDTTTPPLLQ FNGSPAPHDH LVTPKLRKPY TITKQREKWT DQEHQKFLDA 60 LKLYGRAWRQ IEEFIGTKTA VQIRSHAQKF FSKVVRGGND TNESPVEAIE IPPPRPKRKP 120 THPYPRKIVD SQNNTISPSF QPEKRICPHI ATIDSENQSP NSVLSAVMPH LLELPVSEVP 180 DSCLSTSSCS TDLQSGSLYS IDKEDNLKAI NSVQYTGIDA MPTIKRSVMS TEDNLANIGN 240 GSSEEEADLA EATVMLFGQI LYKKDSQRSS TDRKGTFRLS EQHLEKTYDN KHGKLVESSA 300 SNGLDGQSPH GMYYGNWRPW SWHEMNSDSK GGNTCQWMSL PLHRGLPSPY LISCVYAPTR 360 SFVEERTYGK EPCASMVKNE STEETKDTAY AVNKVTLLDT PSLNHSYKSG FVPYKRCFTA 420 GGTNSAKTMT EEEDGLRVQL CL*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MDLLQNQPPP KDTTTPPLLQ FNGSPAPHDH LVTPKLRKPY TITKQREKWT DQEHQKFLDA  60
LKLYGRAWRQ IEEFIGTKTA VQIRSHAQKF FSKVVRGGND TNESPVEAIE IPPPRPKRKP  120
THPYPRKIVD SQNNTISPSF QPEKRICPHI ATIDSENQSP NSVLSAVMPH LLELPVSEVP  180
DSCLSTSSCS TDLQSGSLYS IDKEDNLKAI NSVQYTGIDA MPTIKRSVMS TEDNLANIGN  240
GSSEEEADLA EATVMLFGQI LYKKDSQRSS TDRKGTFRLS EQHLEKTYDN KHGKLVESSA  300
SNGLDGQSPH GMYYGNWRPW SWHEMNSDSK GGNTCQWMSL PLHRGLPSPY LISCVYAPTR  360
SFVEERTYGK EPCASMVKNE STEETKDTAY AVNKVTLLDT PSLNHSYKSG FVPYKRCFTA  420
GGTNSAKTMT EEEDGLRVQL CL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	8e-34	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0688s0005.1.p