PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0684s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YA
Protein Properties Length: 347aa    MW: 37725.1 Da    PI: 9.8975
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0684s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.83.3e-32170226158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++I++RRq Rak+e ekk+  k++kpylheSRh+hA+rR+Rg+gGrF
  Kalax.0684s0008.1.p 170 EEPVYVNAKQYNGIMRRRQIRAKAELEKKV-VKNKKPYLHESRHQHAMRRARGCGGRF 226
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-37168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.399169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-28171226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-22172194IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860174194IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-22203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MMQMKVERGN QRVDADAHGP SASAGFSQPW LQGYGNSDNS PRGISERSLR STSENINVVT  60
VGAINSQVTS GMNIAGHFNK DIPSGIALLP DGFSGQESQT LTTSQSIMSD NHSEGSQREL  120
VGHSMVMASY PYQDPSYGAI IPPYGQQPMV HPHLYAVNQA RMPLPLEMEE EPVYVNAKQY  180
NGIMRRRQIR AKAELEKKVV KNKKPYLHES RHQHAMRRAR GCGGRFLNTK KLNSDTGKST  240
SGGHGTRDDG TISNQSILPR VPGNLPANNS SGYLCPPAEP HNSSLIQDAG KAHNIVSFGN  300
SNNINNIGHG RSSAYQTQAG DTQAYSSQLR ESMRMTGPPR RAFPIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19170234266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.32e-35nuclear factor Y, subunit A1